Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
SHROOM1Q2M3G4 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
SHROOM1Q2M3G4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SHROOM1Q2M3G4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC23.2■■□□□ 1.3
SHROOM1Q2M3G4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
SHROOM1Q2M3G4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
SHROOM1Q2M3G4 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC23.2■■□□□ 1.3
SHROOM1Q2M3G4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 TK2-213ENST00000563369 882 ntTSL 5 BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM1Q2M3G4 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 UNC93B2-201ENST00000285383 730 ntBASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 AC010947.1-201ENST00000623454 693 ntBASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM1Q2M3G4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.17■■□□□ 1.3
SHROOM1Q2M3G4 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 PRR31-201ENST00000371629 978 ntTSL 2 BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 TMPOP1-202ENST00000424642 1267 ntBASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 AC145285.6-201ENST00000604632 637 ntBASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 KRT16P6-202ENST00000425692 1426 ntBASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 GOLGA6L3-201ENST00000507199 1679 ntBASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM1Q2M3G4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 AC073314.1-201ENST00000568729 2216 ntBASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 AC011506.1-201ENST00000474329 610 ntBASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 KRT18P16-201ENST00000510337 1294 ntBASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 DUT-205ENST00000558813 769 ntTSL 2 BASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 PHGDH-210ENST00000641115 1638 ntBASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM1Q2M3G4 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
SHROOM1Q2M3G4 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC23.14■■□□□ 1.3
SHROOM1Q2M3G4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SHROOM1Q2M3G4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC23.14■■□□□ 1.3
SHROOM1Q2M3G4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
SHROOM1Q2M3G4 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SHROOM1Q2M3G4 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SHROOM1Q2M3G4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms