Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.72■□□□□ 0.43
H3F3AP84243 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 AC124283.5-201ENST00000624661 1809 ntBASIC17.72■□□□□ 0.43
H3F3AP84243 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
H3F3AP84243 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.72■□□□□ 0.43
H3F3AP84243 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.72■□□□□ 0.43
H3F3AP84243 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
H3F3AP84243 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.72■□□□□ 0.43
H3F3AP84243 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 AP001271.2-201ENST00000624018 1556 ntBASIC17.72■□□□□ 0.43
H3F3AP84243 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.72■□□□□ 0.43
H3F3AP84243 ESRRAP1-201ENST00000400596 1257 ntBASIC17.72■□□□□ 0.43
H3F3AP84243 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.72■□□□□ 0.43
H3F3AP84243 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.72■□□□□ 0.43
H3F3AP84243 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.72■□□□□ 0.43
H3F3AP84243 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
H3F3AP84243 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.72■□□□□ 0.43
H3F3AP84243 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
H3F3AP84243 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.72■□□□□ 0.43
H3F3AP84243 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
H3F3AP84243 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
H3F3AP84243 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H3F3AP84243 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
H3F3AP84243 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.71■□□□□ 0.43
H3F3AP84243 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.71■□□□□ 0.43
H3F3AP84243 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.71■□□□□ 0.43
H3F3AP84243 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.71■□□□□ 0.43
H3F3AP84243 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.71■□□□□ 0.43
H3F3AP84243 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.71■□□□□ 0.43
H3F3AP84243 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.71■□□□□ 0.43
H3F3AP84243 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 MIR4651-201ENST00000582622 73 ntBASIC17.71■□□□□ 0.43
H3F3AP84243 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
H3F3AP84243 TMEM179-206ENST00000616017 1645 ntBASIC17.71■□□□□ 0.43
H3F3AP84243 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.71■□□□□ 0.43
H3F3AP84243 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
H3F3AP84243 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
H3F3AP84243 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
H3F3AP84243 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
H3F3AP84243 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
H3F3AP84243 AC018553.1-201ENST00000616682 1458 ntBASIC17.7■□□□□ 0.42
H3F3AP84243 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.7■□□□□ 0.42
H3F3AP84243 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
H3F3AP84243 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
H3F3AP84243 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.7■□□□□ 0.42
H3F3AP84243 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
H3F3AP84243 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.7■□□□□ 0.42
H3F3AP84243 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.7■□□□□ 0.42
H3F3AP84243 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.7■□□□□ 0.42
H3F3AP84243 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.7■□□□□ 0.42
H3F3AP84243 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
H3F3AP84243 AL121829.2-201ENST00000620908 328 ntBASIC17.7■□□□□ 0.42
H3F3AP84243 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
H3F3AP84243 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
H3F3AP84243 TFP1-202ENST00000475455 1573 ntBASIC17.7■□□□□ 0.42
H3F3AP84243 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.7■□□□□ 0.42
H3F3AP84243 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
H3F3AP84243 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
H3F3AP84243 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.69■□□□□ 0.42
H3F3AP84243 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
H3F3AP84243 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
H3F3AP84243 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
H3F3AP84243 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.69■□□□□ 0.42
H3F3AP84243 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
H3F3AP84243 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
H3F3AP84243 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
H3F3AP84243 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
H3F3AP84243 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.69■□□□□ 0.42
H3F3AP84243 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.69■□□□□ 0.42
H3F3AP84243 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
H3F3AP84243 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
H3F3AP84243 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
H3F3AP84243 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.68■□□□□ 0.42
H3F3AP84243 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms