Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 AC018553.1-201ENST00000616682 1458 ntBASIC18.81■□□□□ 0.6
RAE1P78406 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
RAE1P78406 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.81■□□□□ 0.6
RAE1P78406 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.81■□□□□ 0.6
RAE1P78406 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.81■□□□□ 0.6
RAE1P78406 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.81■□□□□ 0.6
RAE1P78406 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RAE1P78406 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RAE1P78406 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RAE1P78406 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RAE1P78406 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 AC073210.2-201ENST00000430369 194 ntBASIC18.8■□□□□ 0.6
RAE1P78406 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.8■□□□□ 0.6
RAE1P78406 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.8■□□□□ 0.6
RAE1P78406 AC098934.4-201ENST00000564127 592 ntBASIC18.8■□□□□ 0.6
RAE1P78406 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.8■□□□□ 0.6
RAE1P78406 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.8■□□□□ 0.6
RAE1P78406 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
RAE1P78406 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.8■□□□□ 0.6
RAE1P78406 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RAE1P78406 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
RAE1P78406 AC116351.2-201ENST00000606540 1585 ntBASIC18.8■□□□□ 0.6
RAE1P78406 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RAE1P78406 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RAE1P78406 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RAE1P78406 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.8■□□□□ 0.6
RAE1P78406 AC005332.7-201ENST00000614046 2005 ntBASIC18.79■□□□□ 0.6
RAE1P78406 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.79■□□□□ 0.6
RAE1P78406 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RAE1P78406 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RAE1P78406 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
RAE1P78406 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RAE1P78406 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.79■□□□□ 0.6
RAE1P78406 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.79■□□□□ 0.6
RAE1P78406 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.79■□□□□ 0.6
RAE1P78406 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RAE1P78406 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.79■□□□□ 0.6
RAE1P78406 AL138781.1-201ENST00000566567 1274 ntBASIC18.79■□□□□ 0.6
RAE1P78406 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RAE1P78406 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
RAE1P78406 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
RAE1P78406 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.79■□□□□ 0.6
RAE1P78406 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.79■□□□□ 0.6
RAE1P78406 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.79■□□□□ 0.6
RAE1P78406 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RAE1P78406 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RAE1P78406 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RAE1P78406 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.78■□□□□ 0.6
RAE1P78406 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
RAE1P78406 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
RAE1P78406 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RAE1P78406 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RAE1P78406 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.78■□□□□ 0.6
RAE1P78406 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
RAE1P78406 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.78■□□□□ 0.6
RAE1P78406 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.78■□□□□ 0.6
RAE1P78406 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RAE1P78406 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RAE1P78406 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RAE1P78406 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.78■□□□□ 0.6
RAE1P78406 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RAE1P78406 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.78■□□□□ 0.6
RAE1P78406 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RAE1P78406 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.78■□□□□ 0.6
RAE1P78406 MIR4758-201ENST00000577688 71 ntBASIC18.78■□□□□ 0.6
RAE1P78406 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RAE1P78406 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RAE1P78406 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.78■□□□□ 0.6
RAE1P78406 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RAE1P78406 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
RAE1P78406 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RAE1P78406 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RAE1P78406 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RAE1P78406 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RAE1P78406 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RAE1P78406 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RAE1P78406 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.77■□□□□ 0.6
RAE1P78406 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.77■□□□□ 0.6
RAE1P78406 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.77■□□□□ 0.6
RAE1P78406 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RAE1P78406 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.77■□□□□ 0.6
RAE1P78406 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.77■□□□□ 0.6
RAE1P78406 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RAE1P78406 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RAE1P78406 AC006557.6-201ENST00000623071 864 ntBASIC18.77■□□□□ 0.6
RAE1P78406 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RAE1P78406 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.77■□□□□ 0.6
RAE1P78406 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RAE1P78406 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.77■□□□□ 0.59
RAE1P78406 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms