Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
RNF4P78317 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 AC018553.1-201ENST00000616682 1458 ntBASIC18.34■□□□□ 0.53
RNF4P78317 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.34■□□□□ 0.53
RNF4P78317 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.34■□□□□ 0.53
RNF4P78317 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 AC099778.1-201ENST00000568593 1911 ntBASIC18.34■□□□□ 0.53
RNF4P78317 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.34■□□□□ 0.53
RNF4P78317 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.34■□□□□ 0.53
RNF4P78317 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
RNF4P78317 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.34■□□□□ 0.53
RNF4P78317 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.34■□□□□ 0.53
RNF4P78317 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.34■□□□□ 0.53
RNF4P78317 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.34■□□□□ 0.53
RNF4P78317 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.34■□□□□ 0.53
RNF4P78317 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.34■□□□□ 0.53
RNF4P78317 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF4P78317 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.34■□□□□ 0.53
RNF4P78317 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.33■□□□□ 0.53
RNF4P78317 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RNF4P78317 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RNF4P78317 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.33■□□□□ 0.53
RNF4P78317 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RNF4P78317 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RNF4P78317 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
RNF4P78317 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.33■□□□□ 0.53
RNF4P78317 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RNF4P78317 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RNF4P78317 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RNF4P78317 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RNF4P78317 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RNF4P78317 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF4P78317 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
RNF4P78317 UBE2SP1-201ENST00000450587 669 ntBASIC18.33■□□□□ 0.52
RNF4P78317 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RNF4P78317 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.33■□□□□ 0.52
RNF4P78317 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.33■□□□□ 0.52
RNF4P78317 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.33■□□□□ 0.52
RNF4P78317 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.33■□□□□ 0.52
RNF4P78317 AC110285.5-201ENST00000611501 352 ntBASIC18.33■□□□□ 0.52
RNF4P78317 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.33■□□□□ 0.52
RNF4P78317 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.33■□□□□ 0.52
RNF4P78317 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.33■□□□□ 0.52
RNF4P78317 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.33■□□□□ 0.52
RNF4P78317 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
RNF4P78317 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF4P78317 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF4P78317 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF4P78317 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
RNF4P78317 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF4P78317 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.33■□□□□ 0.52
RNF4P78317 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF4P78317 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF4P78317 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF4P78317 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF4P78317 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF4P78317 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF4P78317 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RNF4P78317 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF4P78317 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF4P78317 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.32■□□□□ 0.52
RNF4P78317 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.32■□□□□ 0.52
RNF4P78317 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.32■□□□□ 0.52
RNF4P78317 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF4P78317 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF4P78317 TFP1-202ENST00000475455 1573 ntBASIC18.32■□□□□ 0.52
RNF4P78317 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF4P78317 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.32■□□□□ 0.52
RNF4P78317 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF4P78317 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF4P78317 NBPF21P-201ENST00000425093 1451 ntBASIC18.32■□□□□ 0.52
RNF4P78317 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RNF4P78317 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF4P78317 AL691432.2-201ENST00000607222 2038 ntBASIC18.32■□□□□ 0.52
RNF4P78317 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.32■□□□□ 0.52
RNF4P78317 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF4P78317 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNF4P78317 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF4P78317 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF4P78317 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNF4P78317 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RNF4P78317 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF4P78317 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF4P78317 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.31■□□□□ 0.52
RNF4P78317 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms