Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.8■□□□□ 0.76
CXCL12P48061 AL121894.2-201ENST00000602977 491 ntBASIC19.8■□□□□ 0.76
CXCL12P48061 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CXCL12P48061 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CXCL12P48061 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL12P48061 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.79■□□□□ 0.76
CXCL12P48061 Z98882.1-201ENST00000622160 2253 ntBASIC19.79■□□□□ 0.76
CXCL12P48061 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL12P48061 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL12P48061 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL12P48061 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CXCL12P48061 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.79■□□□□ 0.76
CXCL12P48061 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL12P48061 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL12P48061 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
CXCL12P48061 KRT18P48-201ENST00000434763 852 ntBASIC19.79■□□□□ 0.76
CXCL12P48061 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL12P48061 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.79■□□□□ 0.76
CXCL12P48061 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.79■□□□□ 0.76
CXCL12P48061 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL12P48061 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CXCL12P48061 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.79■□□□□ 0.76
CXCL12P48061 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL12P48061 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.79■□□□□ 0.76
CXCL12P48061 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.79■□□□□ 0.76
CXCL12P48061 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.79■□□□□ 0.76
CXCL12P48061 AC010653.2-201ENST00000623505 997 ntBASIC19.79■□□□□ 0.76
CXCL12P48061 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.79■□□□□ 0.76
CXCL12P48061 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.79■□□□□ 0.76
CXCL12P48061 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CXCL12P48061 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CXCL12P48061 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.78■□□□□ 0.76
CXCL12P48061 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.78■□□□□ 0.76
CXCL12P48061 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
CXCL12P48061 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CXCL12P48061 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CXCL12P48061 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
CXCL12P48061 KRT16P6-202ENST00000425692 1426 ntBASIC19.78■□□□□ 0.76
CXCL12P48061 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.78■□□□□ 0.76
CXCL12P48061 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.78■□□□□ 0.76
CXCL12P48061 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CXCL12P48061 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.78■□□□□ 0.76
CXCL12P48061 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.78■□□□□ 0.76
CXCL12P48061 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.78■□□□□ 0.76
CXCL12P48061 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.78■□□□□ 0.76
CXCL12P48061 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.78■□□□□ 0.76
CXCL12P48061 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.78■□□□□ 0.76
CXCL12P48061 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.78■□□□□ 0.76
CXCL12P48061 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CXCL12P48061 AC018553.1-201ENST00000616682 1458 ntBASIC19.78■□□□□ 0.76
CXCL12P48061 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CXCL12P48061 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.78■□□□□ 0.76
CXCL12P48061 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CXCL12P48061 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.77■□□□□ 0.76
CXCL12P48061 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CXCL12P48061 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CXCL12P48061 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CXCL12P48061 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CXCL12P48061 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.77■□□□□ 0.76
CXCL12P48061 PCED1CP-201ENST00000419887 785 ntBASIC19.77■□□□□ 0.76
CXCL12P48061 AC007663.1-201ENST00000438948 1240 ntBASIC19.77■□□□□ 0.76
CXCL12P48061 AC008040.2-201ENST00000461049 708 ntBASIC19.77■□□□□ 0.76
CXCL12P48061 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.77■□□□□ 0.76
CXCL12P48061 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CXCL12P48061 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.77■□□□□ 0.76
CXCL12P48061 AC096733.2-201ENST00000609937 1394 ntBASIC19.77■□□□□ 0.76
CXCL12P48061 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CXCL12P48061 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
CXCL12P48061 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CXCL12P48061 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CXCL12P48061 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.76■□□□□ 0.75
CXCL12P48061 AL121603.2-201ENST00000557373 2117 ntBASIC19.76■□□□□ 0.75
CXCL12P48061 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CXCL12P48061 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CXCL12P48061 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.76■□□□□ 0.75
CXCL12P48061 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CXCL12P48061 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
CXCL12P48061 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.76■□□□□ 0.75
CXCL12P48061 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CXCL12P48061 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.76■□□□□ 0.75
CXCL12P48061 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
CXCL12P48061 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.76■□□□□ 0.75
CXCL12P48061 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CXCL12P48061 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.76■□□□□ 0.75
CXCL12P48061 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.76■□□□□ 0.75
CXCL12P48061 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CXCL12P48061 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.76■□□□□ 0.75
CXCL12P48061 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CXCL12P48061 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.76■□□□□ 0.75
CXCL12P48061 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.76■□□□□ 0.75
CXCL12P48061 AL121956.5-201ENST00000625261 221 ntBASIC19.76■□□□□ 0.75
CXCL12P48061 AC141257.4-201ENST00000634557 245 ntBASIC19.76■□□□□ 0.75
CXCL12P48061 AC136944.6-201ENST00000634818 245 ntBASIC19.76■□□□□ 0.75
CXCL12P48061 AL031432.5-201ENST00000641059 760 ntBASIC19.76■□□□□ 0.75
CXCL12P48061 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CXCL12P48061 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms