Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
BRCA1P38398 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRCA1P38398 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
BRCA1P38398 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
BRCA1P38398 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRCA1P38398 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRCA1P38398 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC24.32■■□□□ 1.48
BRCA1P38398 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRCA1P38398 Z85996.1-201ENST00000494644 937 ntBASIC24.32■■□□□ 1.48
BRCA1P38398 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC24.32■■□□□ 1.48
BRCA1P38398 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC24.32■■□□□ 1.48
BRCA1P38398 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC24.32■■□□□ 1.48
BRCA1P38398 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC24.32■■□□□ 1.48
BRCA1P38398 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC24.32■■□□□ 1.48
BRCA1P38398 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BRCA1P38398 AC116351.2-201ENST00000606540 1585 ntBASIC24.31■■□□□ 1.48
BRCA1P38398 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BRCA1P38398 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC24.31■■□□□ 1.48
BRCA1P38398 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC24.31■■□□□ 1.48
BRCA1P38398 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
BRCA1P38398 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
BRCA1P38398 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
BRCA1P38398 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC24.31■■□□□ 1.48
BRCA1P38398 SPDYE13P-201ENST00000445314 798 ntBASIC24.31■■□□□ 1.48
BRCA1P38398 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC24.31■■□□□ 1.48
BRCA1P38398 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
BRCA1P38398 TFP1-202ENST00000475455 1573 ntBASIC24.31■■□□□ 1.48
BRCA1P38398 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC24.31■■□□□ 1.48
BRCA1P38398 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
BRCA1P38398 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BRCA1P38398 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BRCA1P38398 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC24.3■■□□□ 1.48
BRCA1P38398 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC24.3■■□□□ 1.48
BRCA1P38398 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
BRCA1P38398 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC24.3■■□□□ 1.48
BRCA1P38398 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC24.3■■□□□ 1.48
BRCA1P38398 RN7SL510P-201ENST00000581311 263 ntBASIC24.3■■□□□ 1.48
BRCA1P38398 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC24.3■■□□□ 1.48
BRCA1P38398 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC24.3■■□□□ 1.48
BRCA1P38398 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
BRCA1P38398 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC24.3■■□□□ 1.48
BRCA1P38398 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC24.3■■□□□ 1.48
BRCA1P38398 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC24.3■■□□□ 1.48
BRCA1P38398 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC24.3■■□□□ 1.48
BRCA1P38398 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
BRCA1P38398 AC008040.2-201ENST00000461049 708 ntBASIC24.3■■□□□ 1.48
BRCA1P38398 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC24.3■■□□□ 1.48
BRCA1P38398 PRR29-207ENST00000580752 458 ntTSL 3 BASIC24.3■■□□□ 1.48
BRCA1P38398 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC24.3■■□□□ 1.48
BRCA1P38398 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
BRCA1P38398 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC24.29■■□□□ 1.48
BRCA1P38398 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC24.29■■□□□ 1.48
BRCA1P38398 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
BRCA1P38398 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
BRCA1P38398 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
BRCA1P38398 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC24.29■■□□□ 1.48
BRCA1P38398 GLRB-205ENST00000512619 728 ntTSL 3 BASIC24.29■■□□□ 1.48
BRCA1P38398 LY6E-213ENST00000522528 606 ntTSL 3 BASIC24.29■■□□□ 1.48
BRCA1P38398 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC24.29■■□□□ 1.48
BRCA1P38398 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC24.29■■□□□ 1.48
BRCA1P38398 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC24.29■■□□□ 1.48
BRCA1P38398 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
BRCA1P38398 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
BRCA1P38398 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC24.29■■□□□ 1.48
BRCA1P38398 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC24.29■■□□□ 1.48
BRCA1P38398 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
BRCA1P38398 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC24.28■■□□□ 1.48
BRCA1P38398 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC24.28■■□□□ 1.48
BRCA1P38398 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC24.28■■□□□ 1.48
BRCA1P38398 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC24.28■■□□□ 1.48
BRCA1P38398 AL136038.3-201ENST00000561909 1096 ntBASIC24.28■■□□□ 1.48
BRCA1P38398 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC24.28■■□□□ 1.48
BRCA1P38398 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC24.28■■□□□ 1.48
BRCA1P38398 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC24.28■■□□□ 1.48
BRCA1P38398 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC24.28■■□□□ 1.48
BRCA1P38398 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC24.28■■□□□ 1.48
BRCA1P38398 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC24.28■■□□□ 1.48
BRCA1P38398 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC24.28■■□□□ 1.48
BRCA1P38398 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC24.28■■□□□ 1.48
BRCA1P38398 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC24.28■■□□□ 1.48
BRCA1P38398 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
BRCA1P38398 HYMAI.1-201ENST00000620949 238 ntBASIC24.28■■□□□ 1.48
BRCA1P38398 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
BRCA1P38398 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BRCA1P38398 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BRCA1P38398 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
BRCA1P38398 CA15P1-201ENST00000481698 905 ntBASIC24.27■■□□□ 1.48
BRCA1P38398 AP003041.3-201ENST00000527151 707 ntBASIC24.27■■□□□ 1.48
BRCA1P38398 AC111152.3-201ENST00000569699 673 ntBASIC24.27■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms