Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SLC28A1O00337 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.06■□□□□ 0.64
SLC28A1O00337 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SLC28A1O00337 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.06■□□□□ 0.64
SLC28A1O00337 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.06■□□□□ 0.64
SLC28A1O00337 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.06■□□□□ 0.64
SLC28A1O00337 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SLC28A1O00337 PHGDH-210ENST00000641115 1638 ntBASIC19.06■□□□□ 0.64
SLC28A1O00337 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SLC28A1O00337 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.06■□□□□ 0.64
SLC28A1O00337 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SLC28A1O00337 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SLC28A1O00337 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SLC28A1O00337 AC018445.3-201ENST00000624177 1945 ntBASIC19.06■□□□□ 0.64
SLC28A1O00337 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SLC28A1O00337 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SLC28A1O00337 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SLC28A1O00337 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SLC28A1O00337 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SLC28A1O00337 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SLC28A1O00337 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SLC28A1O00337 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SLC28A1O00337 AL162430.1-201ENST00000480705 870 ntBASIC19.05■□□□□ 0.64
SLC28A1O00337 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.05■□□□□ 0.64
SLC28A1O00337 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.05■□□□□ 0.64
SLC28A1O00337 MIR5787-201ENST00000611784 55 ntBASIC19.05■□□□□ 0.64
SLC28A1O00337 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.05■□□□□ 0.64
SLC28A1O00337 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.05■□□□□ 0.64
SLC28A1O00337 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SLC28A1O00337 RNF165-205ENST00000588679 2904 ntBASIC19.05■□□□□ 0.64
SLC28A1O00337 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SLC28A1O00337 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SLC28A1O00337 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SLC28A1O00337 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SLC28A1O00337 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SLC28A1O00337 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SLC28A1O00337 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
SLC28A1O00337 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.04■□□□□ 0.64
SLC28A1O00337 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
SLC28A1O00337 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.04■□□□□ 0.64
SLC28A1O00337 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.04■□□□□ 0.64
SLC28A1O00337 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.04■□□□□ 0.64
SLC28A1O00337 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.04■□□□□ 0.64
SLC28A1O00337 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
SLC28A1O00337 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.04■□□□□ 0.64
SLC28A1O00337 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SLC28A1O00337 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC28A1O00337 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.04■□□□□ 0.64
SLC28A1O00337 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SLC28A1O00337 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
SLC28A1O00337 AC093787.1-201ENST00000450396 207 ntBASIC19.03■□□□□ 0.64
SLC28A1O00337 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 AC005181.1-201ENST00000604782 1256 ntBASIC19.03■□□□□ 0.64
SLC28A1O00337 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.03■□□□□ 0.64
SLC28A1O00337 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SLC28A1O00337 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.03■□□□□ 0.64
SLC28A1O00337 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
SLC28A1O00337 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SLC28A1O00337 KRT17P1-201ENST00000399211 1546 ntBASIC19.03■□□□□ 0.64
SLC28A1O00337 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.03■□□□□ 0.64
SLC28A1O00337 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC28A1O00337 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.03■□□□□ 0.64
SLC28A1O00337 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.02■□□□□ 0.64
SLC28A1O00337 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SLC28A1O00337 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SLC28A1O00337 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SLC28A1O00337 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.02■□□□□ 0.64
SLC28A1O00337 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SLC28A1O00337 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SLC28A1O00337 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.02■□□□□ 0.64
SLC28A1O00337 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
SLC28A1O00337 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.02■□□□□ 0.63
SLC28A1O00337 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
SLC28A1O00337 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.02■□□□□ 0.63
SLC28A1O00337 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SLC28A1O00337 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms