Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC34.57■■■■□ 3.12
CCDC88BA6NC98 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC34.56■■■■□ 3.12
CCDC88BA6NC98 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
CCDC88BA6NC98 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC34.56■■■■□ 3.12
CCDC88BA6NC98 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC34.56■■■■□ 3.12
CCDC88BA6NC98 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
CCDC88BA6NC98 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC34.56■■■■□ 3.12
CCDC88BA6NC98 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
CCDC88BA6NC98 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC34.55■■■■□ 3.12
CCDC88BA6NC98 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC34.55■■■■□ 3.12
CCDC88BA6NC98 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC34.55■■■■□ 3.12
CCDC88BA6NC98 AL138966.2-201ENST00000621997 464 ntBASIC34.55■■■■□ 3.12
CCDC88BA6NC98 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
CCDC88BA6NC98 AC131212.4-201ENST00000623606 975 ntBASIC34.54■■■■□ 3.12
CCDC88BA6NC98 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
CCDC88BA6NC98 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC34.54■■■■□ 3.12
CCDC88BA6NC98 BID-203ENST00000399765 1879 ntTSL 2 BASIC34.54■■■■□ 3.12
CCDC88BA6NC98 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
CCDC88BA6NC98 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC34.54■■■■□ 3.12
CCDC88BA6NC98 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC34.53■■■■□ 3.12
CCDC88BA6NC98 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
CCDC88BA6NC98 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
CCDC88BA6NC98 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC34.53■■■■□ 3.12
CCDC88BA6NC98 PTPA-216ENST00000432651 857 ntTSL 2 BASIC34.53■■■■□ 3.12
CCDC88BA6NC98 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
CCDC88BA6NC98 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
CCDC88BA6NC98 PHGDH-210ENST00000641115 1638 ntBASIC34.53■■■■□ 3.12
CCDC88BA6NC98 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC34.53■■■■□ 3.12
CCDC88BA6NC98 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC34.53■■■■□ 3.12
CCDC88BA6NC98 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
CCDC88BA6NC98 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
CCDC88BA6NC98 LIN28AP1-201ENST00000429574 405 ntBASIC34.52■■■■□ 3.12
CCDC88BA6NC98 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC34.52■■■■□ 3.12
CCDC88BA6NC98 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC34.52■■■■□ 3.12
CCDC88BA6NC98 AC130371.2-201ENST00000619443 611 ntBASIC34.52■■■■□ 3.12
CCDC88BA6NC98 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC34.52■■■■□ 3.12
CCDC88BA6NC98 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
CCDC88BA6NC98 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC34.52■■■■□ 3.12
CCDC88BA6NC98 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
CCDC88BA6NC98 AK4P3-201ENST00000418260 669 ntBASIC34.52■■■■□ 3.12
CCDC88BA6NC98 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC34.52■■■■□ 3.12
CCDC88BA6NC98 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC34.52■■■■□ 3.12
CCDC88BA6NC98 USF2-205ENST00000594064 1179 ntTSL 2 BASIC34.52■■■■□ 3.12
CCDC88BA6NC98 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC34.51■■■■□ 3.12
CCDC88BA6NC98 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC34.51■■■■□ 3.12
CCDC88BA6NC98 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC34.51■■■■□ 3.12
CCDC88BA6NC98 FAM8A6P-201ENST00000407496 1135 ntBASIC34.51■■■■□ 3.11
CCDC88BA6NC98 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.11
CCDC88BA6NC98 AC091390.4-202ENST00000476426 537 ntBASIC34.51■■■■□ 3.11
CCDC88BA6NC98 AC128688.1-201ENST00000487626 519 ntBASIC34.51■■■■□ 3.11
CCDC88BA6NC98 Z85996.1-201ENST00000494644 937 ntBASIC34.51■■■■□ 3.11
CCDC88BA6NC98 AC011298.2-201ENST00000617989 482 ntBASIC34.51■■■■□ 3.11
CCDC88BA6NC98 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC34.51■■■■□ 3.11
CCDC88BA6NC98 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC34.5■■■■□ 3.11
CCDC88BA6NC98 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
CCDC88BA6NC98 HMGA1P5-201ENST00000412453 271 ntBASIC34.5■■■■□ 3.11
CCDC88BA6NC98 ATP5G1P1-201ENST00000448724 379 ntBASIC34.5■■■■□ 3.11
CCDC88BA6NC98 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC34.5■■■■□ 3.11
CCDC88BA6NC98 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC34.5■■■■□ 3.11
CCDC88BA6NC98 AC006128.1-201ENST00000624704 1661 ntBASIC34.5■■■■□ 3.11
CCDC88BA6NC98 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
CCDC88BA6NC98 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC34.49■■■■□ 3.11
CCDC88BA6NC98 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC34.49■■■■□ 3.11
CCDC88BA6NC98 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 WWC2-AS2-201ENST00000578387 2183 ntBASIC34.48■■■■□ 3.11
CCDC88BA6NC98 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 MFAP1P1-201ENST00000442257 1255 ntBASIC34.48■■■■□ 3.11
CCDC88BA6NC98 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 KRT16P6-202ENST00000425692 1426 ntBASIC34.48■■■■□ 3.11
CCDC88BA6NC98 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
CCDC88BA6NC98 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
CCDC88BA6NC98 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
CCDC88BA6NC98 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC34.47■■■■□ 3.11
CCDC88BA6NC98 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC34.47■■■■□ 3.11
CCDC88BA6NC98 SLC25A1P4-201ENST00000567977 778 ntBASIC34.47■■■■□ 3.11
CCDC88BA6NC98 AL358472.4-201ENST00000633140 710 ntBASIC34.47■■■■□ 3.11
CCDC88BA6NC98 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
CCDC88BA6NC98 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
CCDC88BA6NC98 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC34.47■■■■□ 3.11
CCDC88BA6NC98 HIST1H2APS4-201ENST00000362070 348 ntBASIC34.46■■■■□ 3.11
CCDC88BA6NC98 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC34.46■■■■□ 3.11
CCDC88BA6NC98 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC34.46■■■■□ 3.11
CCDC88BA6NC98 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
CCDC88BA6NC98 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
CCDC88BA6NC98 AC133561.1-201ENST00000568600 2415 ntBASIC34.46■■■■□ 3.11
CCDC88BA6NC98 AC007225.1-201ENST00000566331 1836 ntBASIC34.46■■■■□ 3.11
CCDC88BA6NC98 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
CCDC88BA6NC98 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC34.46■■■■□ 3.11
CCDC88BA6NC98 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC34.46■■■■□ 3.11
CCDC88BA6NC98 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC34.46■■■■□ 3.11
CCDC88BA6NC98 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC34.45■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms