Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SULT1D1P-201ENST00000458020 882 ntBASIC6.52□□□□□ -1.37
MSX2P35548 RN7SL152P-201ENST00000484176 298 ntBASIC6.52□□□□□ -1.37
MSX2P35548 OR2A3P-201ENST00000493774 953 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AC118465.1-201ENST00000513820 1271 ntBASIC6.52□□□□□ -1.37
MSX2P35548 RNU5A-7P-201ENST00000515979 116 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AC010376.1-201ENST00000522101 334 ntBASIC6.52□□□□□ -1.37
MSX2P35548 OR7E10P-201ENST00000526420 991 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AP001782.1-202ENST00000527774 445 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 SNHG14-217ENST00000552781 552 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 AC022405.1-201ENST00000559841 516 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC6.52□□□□□ -1.37
MSX2P35548 AC136944.5-201ENST00000573021 151 ntBASIC6.52□□□□□ -1.37
MSX2P35548 RN7SL786P-201ENST00000579130 298 ntBASIC6.52□□□□□ -1.37
MSX2P35548 MIR3689F-201ENST00000579617 66 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC6.52□□□□□ -1.37
MSX2P35548 PRELID3BP3-201ENST00000584963 545 ntBASIC6.52□□□□□ -1.37
MSX2P35548 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC6.52□□□□□ -1.37
MSX2P35548 AL137246.2-201ENST00000613439 662 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AC239809.3-218ENST00000616018 1023 ntTSL 5 BASIC6.52□□□□□ -1.37
MSX2P35548 RN7SL820P-201ENST00000616437 299 ntBASIC6.52□□□□□ -1.37
MSX2P35548 MIR6723-201ENST00000621981 89 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC6.52□□□□□ -1.37
MSX2P35548 AC091059.2-201ENST00000623355 614 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AL353608.4-201ENST00000624487 1188 ntBASIC6.52□□□□□ -1.37
MSX2P35548 AC009779.8-201ENST00000641684 4384 ntBASIC6.52□□□□□ -1.37
MSX2P35548 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
MSX2P35548 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.52□□□□□ -1.37
MSX2P35548 AC067942.1-201ENST00000488045 1493 ntBASIC6.52□□□□□ -1.37
MSX2P35548 MKI67P1-201ENST00000604297 1460 ntBASIC6.52□□□□□ -1.37
MSX2P35548 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
MSX2P35548 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
MSX2P35548 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.52□□□□□ -1.37
MSX2P35548 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
MSX2P35548 SLC9B1P3-201ENST00000452667 1334 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AL606490.2-201ENST00000457562 1330 ntBASIC6.51□□□□□ -1.37
MSX2P35548 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX2P35548 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 AP002370.1-201ENST00000528055 1602 ntBASIC6.51□□□□□ -1.37
MSX2P35548 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX2P35548 LINC01232-204ENST00000626729 2796 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX2P35548 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 AC105749.1-201ENST00000631338 2008 ntBASIC6.51□□□□□ -1.37
MSX2P35548 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 PIP-201ENST00000291009 585 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 KCNIP2-202ENST00000343195 663 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 FABP9-201ENST00000379071 497 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
MSX2P35548 RN7SKP188-201ENST00000410789 317 ntBASIC6.51□□□□□ -1.37
MSX2P35548 RN7SKP85-201ENST00000411349 318 ntBASIC6.51□□□□□ -1.37
MSX2P35548 MTND4LP13-201ENST00000425022 298 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AL591846.2-201ENST00000425161 358 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX2P35548 AC114402.2-201ENST00000432760 643 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX2P35548 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX2P35548 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX2P35548 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 AL604028.2-201ENST00000437848 788 ntBASIC6.51□□□□□ -1.37
MSX2P35548 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 TRMT2B-AS1-201ENST00000443801 205 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX2P35548 GHRL-210ENST00000449238 440 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX2P35548 OR52Y1P-201ENST00000452418 828 ntBASIC6.51□□□□□ -1.37
MSX2P35548 VN1R40P-201ENST00000455196 941 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AC013429.1-201ENST00000456604 422 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC6.51□□□□□ -1.37
MSX2P35548 RN7SL688P-201ENST00000471754 275 ntBASIC6.51□□□□□ -1.37
MSX2P35548 H3F3AP3-201ENST00000497682 407 ntBASIC6.51□□□□□ -1.37
MSX2P35548 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX2P35548 AC021220.1-201ENST00000507445 630 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AC108157.1-201ENST00000510511 539 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX2P35548 Y_RNA.688-201ENST00000516565 95 ntBASIC6.51□□□□□ -1.37
MSX2P35548 VDAC3-206ENST00000521158 949 ntAPPRIS ALT1 TSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 AC055860.1-201ENST00000525523 688 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 FOLH1B-202ENST00000529567 2145 ntBASIC6.51□□□□□ -1.37
MSX2P35548 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC6.51□□□□□ -1.37
MSX2P35548 OR4A41P-201ENST00000533053 928 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AC068631.3-201ENST00000538831 225 ntBASIC6.51□□□□□ -1.37
MSX2P35548 REXO2-218ENST00000544827 880 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX2P35548 LINC02322-201ENST00000554773 338 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX2P35548 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 AC018558.5-201ENST00000565840 952 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AC087292.1-201ENST00000573371 512 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 AC024267.3-201ENST00000579673 562 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 ZNF675-202ENST00000596211 581 ntTSL 4 BASIC6.51□□□□□ -1.37
MSX2P35548 LINC00632-203ENST00000602535 723 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX2P35548 AL953862.2-201ENST00000603089 820 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AC002487.1-201ENST00000604565 994 ntBASIC6.51□□□□□ -1.37
MSX2P35548 AC004241.3-201ENST00000611728 517 ntBASIC6.51□□□□□ -1.37
MSX2P35548 MIR8084-201ENST00000614105 89 ntBASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms