Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC7.5□□□□□ -1.21
COL6A1P12109 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
COL6A1P12109 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
COL6A1P12109 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL6A1P12109 MRPS6P2-201ENST00000381143 370 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC7.5□□□□□ -1.21
COL6A1P12109 UBE2V1P15-201ENST00000407776 448 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC7.5□□□□□ -1.21
COL6A1P12109 MTND4LP21-201ENST00000415303 295 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL6A1P12109 RPL12P16-201ENST00000431098 498 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 AC011242.1-201ENST00000433596 1158 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC7.5□□□□□ -1.21
COL6A1P12109 PMS2P9-201ENST00000441237 515 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 COX4I1P2-201ENST00000447446 547 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC7.5□□□□□ -1.21
COL6A1P12109 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC7.5□□□□□ -1.21
COL6A1P12109 RPL24-206ENST00000495401 478 ntTSL 2 BASIC7.5□□□□□ -1.21
COL6A1P12109 TRAV31-201ENST00000502780 342 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC7.5□□□□□ -1.21
COL6A1P12109 GOLGA5P1-201ENST00000507317 980 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC7.5□□□□□ -1.21
COL6A1P12109 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC7.5□□□□□ -1.21
COL6A1P12109 ASB8-203ENST00000535988 679 ntTSL 2 BASIC7.5□□□□□ -1.21
COL6A1P12109 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
COL6A1P12109 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC7.5□□□□□ -1.21
COL6A1P12109 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC7.5□□□□□ -1.21
COL6A1P12109 AC112220.2-201ENST00000605513 533 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 AC120053.1-201ENST00000607706 736 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC7.5□□□□□ -1.21
COL6A1P12109 AC097372.4-201ENST00000625025 466 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC7.5□□□□□ -1.21
COL6A1P12109 AL445984.1-201ENST00000637834 659 ntBASIC7.5□□□□□ -1.21
COL6A1P12109 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL6A1P12109 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL6A1P12109 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
COL6A1P12109 ZBTB18-201ENST00000358704 3851 ntAPPRIS P2 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL6A1P12109 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL6A1P12109 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC7.5□□□□□ -1.21
COL6A1P12109 LMO3-208ENST00000441439 3515 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL6A1P12109 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL6A1P12109 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL6A1P12109 NLRC4-204ENST00000404025 3581 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
COL6A1P12109 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC7.5□□□□□ -1.21
COL6A1P12109 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC7.5□□□□□ -1.21
COL6A1P12109 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC7.5□□□□□ -1.21
COL6A1P12109 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC7.49□□□□□ -1.21
COL6A1P12109 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 AC012078.1-201ENST00000405035 1646 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC7.49□□□□□ -1.21
COL6A1P12109 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
COL6A1P12109 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 RPL11P4-201ENST00000332269 436 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 RN7SKP47-201ENST00000365347 328 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
COL6A1P12109 RBBP4P4-201ENST00000398588 1289 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 AL359694.1-201ENST00000403247 604 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 RNU6-584P-201ENST00000410350 95 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 RANP6-201ENST00000413691 644 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 AL354707.3-201ENST00000427308 331 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 PNKDP1-201ENST00000435914 430 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 AL139824.2-201ENST00000458731 1095 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC7.49□□□□□ -1.21
COL6A1P12109 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC7.49□□□□□ -1.21
COL6A1P12109 AC025768.1-201ENST00000510057 267 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 OR52H2P-201ENST00000514607 902 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 Y_RNA.717-201ENST00000517106 92 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC7.49□□□□□ -1.21
COL6A1P12109 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC7.49□□□□□ -1.21
COL6A1P12109 TRIM77BP-201ENST00000524985 1119 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC7.49□□□□□ -1.21
COL6A1P12109 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC7.49□□□□□ -1.21
COL6A1P12109 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC7.49□□□□□ -1.21
COL6A1P12109 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC7.49□□□□□ -1.21
COL6A1P12109 RN7SL339P-201ENST00000580597 296 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 SYPL1P2-201ENST00000582878 727 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC7.49□□□□□ -1.21
COL6A1P12109 OR7A11P-201ENST00000597719 953 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 AF129408.1-201ENST00000608767 431 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 AL356608.1-201ENST00000610034 820 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 AL138955.1-201ENST00000622881 1040 ntBASIC7.49□□□□□ -1.21
COL6A1P12109 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC7.49□□□□□ -1.21
COL6A1P12109 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC7.49□□□□□ -1.21
COL6A1P12109 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC7.49□□□□□ -1.21
COL6A1P12109 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
COL6A1P12109 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL6A1P12109 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC7.48□□□□□ -1.21
COL6A1P12109 RBM11-201ENST00000400577 1934 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL6A1P12109 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms