Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
HMGB1P09429 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC8.05□□□□□ -1.12
HMGB1P09429 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
HMGB1P09429 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
HMGB1P09429 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC8.05□□□□□ -1.12
HMGB1P09429 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC8.05□□□□□ -1.12
HMGB1P09429 SNORA70.3-201ENST00000365075 132 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
HMGB1P09429 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC8.05□□□□□ -1.12
HMGB1P09429 OR6K4P-201ENST00000423179 955 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC8.05□□□□□ -1.12
HMGB1P09429 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC8.05□□□□□ -1.12
HMGB1P09429 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC8.05□□□□□ -1.12
HMGB1P09429 RSL24D1P8-201ENST00000434442 492 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 AC245452.2-201ENST00000435222 392 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 AP000936.3-201ENST00000438127 255 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC8.05□□□□□ -1.12
HMGB1P09429 AC027124.1-201ENST00000440852 466 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 AC245517.2-201ENST00000442890 346 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 RPS7P4-201ENST00000444127 582 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 REG1CP-206ENST00000447469 496 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 RPL7AP10-201ENST00000481016 791 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 CR383656.1-201ENST00000484916 377 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC8.05□□□□□ -1.12
HMGB1P09429 AC108157.1-201ENST00000510511 539 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 SNX18P23-201ENST00000510867 677 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 AC022826.1-201ENST00000519383 805 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 CARSP2-201ENST00000520688 277 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
HMGB1P09429 RN7SL689P-201ENST00000577215 297 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 CTSLP2-201ENST00000580501 394 ntBASIC8.05□□□□□ -1.12
HMGB1P09429 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC8.05□□□□□ -1.12
HMGB1P09429 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
HMGB1P09429 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.12
HMGB1P09429 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
HMGB1P09429 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
HMGB1P09429 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
HMGB1P09429 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC8.05□□□□□ -1.12
HMGB1P09429 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC8.05□□□□□ -1.12
HMGB1P09429 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
HMGB1P09429 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
HMGB1P09429 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC8.04□□□□□ -1.12
HMGB1P09429 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HMGB1P09429 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
HMGB1P09429 DDX6P1-205ENST00000441966 1436 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AL031651.1-201ENST00000615357 1438 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC8.04□□□□□ -1.12
HMGB1P09429 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HMGB1P09429 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC8.04□□□□□ -1.12
HMGB1P09429 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC8.04□□□□□ -1.12
HMGB1P09429 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
HMGB1P09429 AP000432.2-201ENST00000624164 2048 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC8.04□□□□□ -1.12
HMGB1P09429 RNA5SP176-201ENST00000390956 110 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC8.04□□□□□ -1.12
HMGB1P09429 RPLP1P10-201ENST00000413972 339 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 EIF4A1P5-201ENST00000428062 1095 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AC239367.3-201ENST00000428996 814 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC8.04□□□□□ -1.12
HMGB1P09429 MTND2P2-201ENST00000434633 945 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 FABP5P2-201ENST00000439042 408 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AL035551.1-201ENST00000446931 348 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC8.04□□□□□ -1.12
HMGB1P09429 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC8.04□□□□□ -1.12
HMGB1P09429 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC8.04□□□□□ -1.12
HMGB1P09429 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC8.04□□□□□ -1.12
HMGB1P09429 RN7SL654P-201ENST00000479178 292 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 RPS10P28-201ENST00000480396 498 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 RN7SL849P-201ENST00000485236 295 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 RPL23AP80-201ENST00000495605 424 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC8.04□□□□□ -1.12
HMGB1P09429 IGHVII-51-2-201ENST00000519778 259 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC8.04□□□□□ -1.12
HMGB1P09429 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC8.04□□□□□ -1.12
HMGB1P09429 AC069240.2-201ENST00000550242 609 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC8.04□□□□□ -1.12
HMGB1P09429 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC8.04□□□□□ -1.12
HMGB1P09429 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC8.04□□□□□ -1.12
HMGB1P09429 AC090241.1-201ENST00000587732 621 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AP004372.1-201ENST00000604842 844 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 Z95327.3-201ENST00000610385 572 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AL445647.2-201ENST00000615170 130 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 Six3os1_4.1-201ENST00000615706 324 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AC009283.1-201ENST00000615852 645 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 AC103564.3-201ENST00000621194 220 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
HMGB1P09429 AP003499.2-201ENST00000624100 483 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 SNORA16A-202ENST00000628458 135 ntBASIC8.04□□□□□ -1.12
HMGB1P09429 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HMGB1P09429 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC8.04□□□□□ -1.12
HMGB1P09429 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
HMGB1P09429 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
HMGB1P09429 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
HMGB1P09429 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC8.04□□□□□ -1.12
HMGB1P09429 COG2-209ENST00000534989 2963 ntTSL 2 BASIC8.04□□□□□ -1.12
HMGB1P09429 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC8.04□□□□□ -1.12
HMGB1P09429 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC8.04□□□□□ -1.12
HMGB1P09429 EEF1A1P21-201ENST00000512363 1344 ntBASIC8.03□□□□□ -1.12
HMGB1P09429 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms