Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
VPS8Q8N3P4 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
VPS8Q8N3P4 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
VPS8Q8N3P4 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
VPS8Q8N3P4 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
VPS8Q8N3P4 RNA5SP433-201ENST00000364491 114 ntBASIC9.73□□□□□ -0.85
VPS8Q8N3P4 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 KRTAP2-5P-201ENST00000446109 396 ntBASIC9.73□□□□□ -0.85
VPS8Q8N3P4 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 LDHAP1-201ENST00000509421 992 ntBASIC9.73□□□□□ -0.85
VPS8Q8N3P4 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 RNA5SP340-201ENST00000517132 107 ntBASIC9.73□□□□□ -0.85
VPS8Q8N3P4 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 MIR4301-201ENST00000577203 66 ntBASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AC091193.1-201ENST00000604640 448 ntBASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AC108865.2-201ENST00000606881 432 ntBASIC9.73□□□□□ -0.85
VPS8Q8N3P4 RN7SL261P-201ENST00000613441 282 ntBASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AC003992.1-201ENST00000635364 557 ntBASIC9.73□□□□□ -0.85
VPS8Q8N3P4 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 GMDS-AS1-202ENST00000505870 8217 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AC009963.3-201ENST00000458090 486 ntBASIC9.73□□□□□ -0.85
VPS8Q8N3P4 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC9.73□□□□□ -0.85
VPS8Q8N3P4 AC005726.4-201ENST00000582858 458 ntBASIC9.73□□□□□ -0.85
VPS8Q8N3P4 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AC123769.2-201ENST00000624332 5984 ntBASIC9.72□□□□□ -0.85
VPS8Q8N3P4 RPL7AP14-201ENST00000424041 802 ntBASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AC069154.1-201ENST00000432914 542 ntBASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AL138899.2-201ENST00000439139 499 ntBASIC9.72□□□□□ -0.85
VPS8Q8N3P4 DNAJA1P5-201ENST00000440278 943 ntBASIC9.72□□□□□ -0.85
VPS8Q8N3P4 RBBP4P1-201ENST00000502424 1276 ntBASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AC025458.1-201ENST00000506046 166 ntBASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 RNU4ATAC-201ENST00000580972 127 ntBASIC9.72□□□□□ -0.85
VPS8Q8N3P4 MIR4310-201ENST00000582950 57 ntBASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
VPS8Q8N3P4 RBMY1HP-201ENST00000382759 1389 ntBASIC9.72□□□□□ -0.85
VPS8Q8N3P4 AC119674.1-213ENST00000641177 1386 ntBASIC9.72□□□□□ -0.85
VPS8Q8N3P4 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
VPS8Q8N3P4 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC9.71□□□□□ -0.85
VPS8Q8N3P4 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC9.71□□□□□ -0.85
VPS8Q8N3P4 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC9.71□□□□□ -0.85
VPS8Q8N3P4 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC9.71□□□□□ -0.85
VPS8Q8N3P4 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
VPS8Q8N3P4 QRSL1P1-201ENST00000400977 1540 ntBASIC9.71□□□□□ -0.86
VPS8Q8N3P4 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 AC006213.6-201ENST00000623722 4179 ntBASIC9.71□□□□□ -0.86
VPS8Q8N3P4 COX6B1P3-201ENST00000312310 260 ntBASIC9.71□□□□□ -0.86
VPS8Q8N3P4 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 AL132875.1-201ENST00000403623 949 ntBASIC9.71□□□□□ -0.86
VPS8Q8N3P4 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 RPL5P10-201ENST00000445207 894 ntBASIC9.71□□□□□ -0.86
VPS8Q8N3P4 SEPHS1P4-201ENST00000446112 1176 ntBASIC9.71□□□□□ -0.86
VPS8Q8N3P4 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 BICD1-206ENST00000551086 423 ntTSL 3 BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 AC020916.2-201ENST00000591242 360 ntBASIC9.71□□□□□ -0.86
VPS8Q8N3P4 HYDIN2-203ENST00000614586 13885 ntBASIC9.71□□□□□ -0.86
VPS8Q8N3P4 AC096921.2-201ENST00000561507 1916 ntBASIC9.71□□□□□ -0.86
VPS8Q8N3P4 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC9.71□□□□□ -0.86
VPS8Q8N3P4 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC9.7□□□□□ -0.86
VPS8Q8N3P4 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
VPS8Q8N3P4 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 269.9 ms