Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC10.33□□□□□ -0.76
CUX1P39880 AC235565.1-201ENST00000456962 1325 ntBASIC10.33□□□□□ -0.76
CUX1P39880 ERG-205ENST00000398910 4954 ntTSL 5 BASIC10.33□□□□□ -0.76
CUX1P39880 EPHA1-AS1-202ENST00000429289 5018 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC10.33□□□□□ -0.76
CUX1P39880 AL355916.1-202ENST00000508827 5103 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 AL096829.1-201ENST00000413677 457 ntBASIC10.33□□□□□ -0.76
CUX1P39880 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC10.33□□□□□ -0.76
CUX1P39880 AC138866.2-201ENST00000508650 584 ntBASIC10.33□□□□□ -0.76
CUX1P39880 AC010343.2-201ENST00000510162 224 ntBASIC10.33□□□□□ -0.76
CUX1P39880 AC022404.1-201ENST00000555320 273 ntBASIC10.33□□□□□ -0.76
CUX1P39880 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC10.33□□□□□ -0.76
CUX1P39880 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC10.33□□□□□ -0.76
CUX1P39880 DPPA2P4-201ENST00000563717 878 ntBASIC10.33□□□□□ -0.76
CUX1P39880 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC10.33□□□□□ -0.76
CUX1P39880 AC004948.1-201ENST00000609858 672 ntBASIC10.33□□□□□ -0.76
CUX1P39880 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
CUX1P39880 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC10.32□□□□□ -0.76
CUX1P39880 MFSD8-217ENST00000641178 4374 ntBASIC10.32□□□□□ -0.76
CUX1P39880 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
CUX1P39880 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC10.32□□□□□ -0.76
CUX1P39880 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC10.32□□□□□ -0.76
CUX1P39880 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
CUX1P39880 AC004014.2-201ENST00000623718 5122 ntBASIC10.32□□□□□ -0.76
CUX1P39880 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CUX1P39880 RN7SKP160-201ENST00000363804 340 ntBASIC10.32□□□□□ -0.76
CUX1P39880 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC10.32□□□□□ -0.76
CUX1P39880 AC092967.1-201ENST00000449016 481 ntBASIC10.32□□□□□ -0.76
CUX1P39880 ATG10-208ENST00000513634 618 ntTSL 2 BASIC10.32□□□□□ -0.76
CUX1P39880 AC006530.1-201ENST00000555980 571 ntBASIC10.32□□□□□ -0.76
CUX1P39880 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC10.32□□□□□ -0.76
CUX1P39880 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC10.32□□□□□ -0.76
CUX1P39880 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CUX1P39880 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CUX1P39880 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CUX1P39880 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CUX1P39880 TANC1-201ENST00000263635 7470 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
CUX1P39880 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC10.31□□□□□ -0.76
CUX1P39880 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CUX1P39880 AC109780.1-201ENST00000451768 1344 ntBASIC10.31□□□□□ -0.76
CUX1P39880 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CUX1P39880 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
CUX1P39880 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
CUX1P39880 RN7SKP77-201ENST00000363261 353 ntBASIC10.31□□□□□ -0.76
CUX1P39880 RN7SKP162-201ENST00000363605 345 ntBASIC10.31□□□□□ -0.76
CUX1P39880 AC002504.1-201ENST00000438281 691 ntBASIC10.31□□□□□ -0.76
CUX1P39880 AC095057.1-201ENST00000507583 168 ntBASIC10.31□□□□□ -0.76
CUX1P39880 AP004607.6-201ENST00000525033 1202 ntBASIC10.31□□□□□ -0.76
CUX1P39880 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
CUX1P39880 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC10.31□□□□□ -0.76
CUX1P39880 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC10.31□□□□□ -0.76
CUX1P39880 AL445670.1-201ENST00000618889 801 ntBASIC10.31□□□□□ -0.76
CUX1P39880 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC10.31□□□□□ -0.76
CUX1P39880 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CUX1P39880 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
CUX1P39880 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CUX1P39880 MARK2P4-201ENST00000503381 2380 ntBASIC10.31□□□□□ -0.76
CUX1P39880 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC10.31□□□□□ -0.76
CUX1P39880 CBFA2T2-203ENST00000346541 7737 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CUX1P39880 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
CUX1P39880 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CUX1P39880 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CUX1P39880 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.76
CUX1P39880 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC10.3□□□□□ -0.76
CUX1P39880 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CUX1P39880 DUXAP8-203ENST00000437781 2398 ntTSL 2 BASIC10.3□□□□□ -0.76
CUX1P39880 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC10.3□□□□□ -0.76
CUX1P39880 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC10.3□□□□□ -0.76
CUX1P39880 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC10.3□□□□□ -0.76
CUX1P39880 FTH1P10-202ENST00000430907 550 ntBASIC10.3□□□□□ -0.76
CUX1P39880 AP006245.2-201ENST00000522004 300 ntBASIC10.3□□□□□ -0.76
CUX1P39880 PCNAP4-201ENST00000532690 730 ntBASIC10.3□□□□□ -0.76
CUX1P39880 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC10.3□□□□□ -0.76
CUX1P39880 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC10.3□□□□□ -0.76
CUX1P39880 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC10.3□□□□□ -0.76
CUX1P39880 SUMO2P15-201ENST00000604285 278 ntBASIC10.3□□□□□ -0.76
CUX1P39880 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
CUX1P39880 DHFR2-202ENST00000394221 4038 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CUX1P39880 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
CUX1P39880 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC10.3□□□□□ -0.76
CUX1P39880 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CUX1P39880 CLCN5-204ENST00000376108 2660 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CUX1P39880 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC10.3□□□□□ -0.76
CUX1P39880 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
CUX1P39880 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
CUX1P39880 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
CUX1P39880 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
CUX1P39880 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
CUX1P39880 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC10.29□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms