Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 AL080312.1-201ENST00000256654 824 ntBASIC6.54□□□□□ -1.36
MSX2P35548 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 SCGB1A1-201ENST00000278282 441 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 OR51H1-201ENST00000322059 999 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
MSX2P35548 RN7SKP47-201ENST00000365347 328 ntBASIC6.54□□□□□ -1.36
MSX2P35548 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 ALDH1A1-202ENST00000376939 822 ntTSL 5 BASIC6.54□□□□□ -1.36
MSX2P35548 MIR181C-201ENST00000384881 110 ntBASIC6.54□□□□□ -1.36
MSX2P35548 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC6.54□□□□□ -1.36
MSX2P35548 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 HYALP1-201ENST00000417674 1279 ntBASIC6.54□□□□□ -1.36
MSX2P35548 HCG25-217ENST00000422366 702 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX2P35548 OR7E117P-201ENST00000422682 1112 ntBASIC6.54□□□□□ -1.36
MSX2P35548 MTND4P24-201ENST00000424002 397 ntBASIC6.54□□□□□ -1.36
MSX2P35548 GAPDHP46-201ENST00000424043 994 ntBASIC6.54□□□□□ -1.36
MSX2P35548 OR5P4P-201ENST00000424698 917 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AL357632.1-201ENST00000426688 643 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX2P35548 UBE2V1P1-201ENST00000430836 445 ntBASIC6.54□□□□□ -1.36
MSX2P35548 FECHP1-201ENST00000431896 1214 ntBASIC6.54□□□□□ -1.36
MSX2P35548 LINC00271-203ENST00000438618 1202 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX2P35548 CYP2C56P-201ENST00000440076 291 ntBASIC6.54□□□□□ -1.36
MSX2P35548 PRSS48-201ENST00000441586 560 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX2P35548 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC6.54□□□□□ -1.36
MSX2P35548 EXOSC3P1-201ENST00000448649 500 ntBASIC6.54□□□□□ -1.36
MSX2P35548 LINC01961-201ENST00000449954 745 ntTSL 5 BASIC6.54□□□□□ -1.36
MSX2P35548 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC6.54□□□□□ -1.36
MSX2P35548 ART2BP-201ENST00000453501 499 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AC115223.1-201ENST00000466377 870 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AP000805.1-201ENST00000471604 784 ntBASIC6.54□□□□□ -1.36
MSX2P35548 RN7SL549P-201ENST00000478997 282 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX2P35548 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC6.54□□□□□ -1.36
MSX2P35548 AC114801.1-201ENST00000512633 297 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AC021146.10-201ENST00000515628 706 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX2P35548 AC087752.2-201ENST00000521219 281 ntBASIC6.54□□□□□ -1.36
MSX2P35548 LINC00958-202ENST00000526388 607 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 AC103681.2-201ENST00000527450 567 ntTSL 4 BASIC6.54□□□□□ -1.36
MSX2P35548 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
MSX2P35548 AP003066.2-201ENST00000529375 555 ntBASIC6.54□□□□□ -1.36
MSX2P35548 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX2P35548 AP006587.5-201ENST00000532033 739 ntBASIC6.54□□□□□ -1.36
MSX2P35548 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 UBTFL9-201ENST00000534504 1148 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 OSBPL9P5-201ENST00000542581 171 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX2P35548 SNHG1-223ENST00000545440 754 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 AL117192.1-204ENST00000553485 449 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX2P35548 NDUFA3P4-201ENST00000560814 250 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX2P35548 MIR5192-201ENST00000579892 92 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX2P35548 MIR4470-201ENST00000583453 72 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AC011824.1-201ENST00000584863 561 ntTSL 4 BASIC6.54□□□□□ -1.36
MSX2P35548 AC005323.1-203ENST00000585303 566 ntTSL 5 BASIC6.54□□□□□ -1.36
MSX2P35548 INTS6-AS1-218ENST00000598905 906 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
MSX2P35548 AC008536.1-201ENST00000602872 669 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AL359704.2-201ENST00000604335 521 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AL049840.6-201ENST00000604583 345 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AC087633.2-208ENST00000612877 502 ntTSL 5 BASIC6.54□□□□□ -1.36
MSX2P35548 AC245389.2-201ENST00000616023 576 ntBASIC6.54□□□□□ -1.36
MSX2P35548 MIR6736-201ENST00000616799 59 ntBASIC6.54□□□□□ -1.36
MSX2P35548 AC242843.1-201ENST00000618702 573 ntBASIC6.54□□□□□ -1.36
MSX2P35548 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 AC090099.1-204ENST00000623626 849 ntBASIC6.54□□□□□ -1.36
MSX2P35548 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 MAPK10-270ENST00000641102 3538 ntBASIC6.54□□□□□ -1.36
MSX2P35548 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX2P35548 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.54□□□□□ -1.36
MSX2P35548 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX2P35548 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX2P35548 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX2P35548 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
MSX2P35548 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX2P35548 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC6.53□□□□□ -1.36
MSX2P35548 AC006213.6-201ENST00000623722 4179 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AC125232.1-201ENST00000452554 1408 ntBASIC6.53□□□□□ -1.36
MSX2P35548 AL355377.1-201ENST00000621125 1653 ntBASIC6.53□□□□□ -1.36
MSX2P35548 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC6.53□□□□□ -1.36
MSX2P35548 RPL12P1-201ENST00000374520 498 ntBASIC6.53□□□□□ -1.36
MSX2P35548 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX2P35548 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC6.53□□□□□ -1.36
MSX2P35548 IL20-203ENST00000391930 1153 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX2P35548 MSRB1P1-201ENST00000396851 354 ntBASIC6.53□□□□□ -1.36
MSX2P35548 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms