Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
HLA-DMBP28068 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC4.92□□□□□ -1.62
HLA-DMBP28068 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 LRRC37A15P-201ENST00000514785 1355 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 NSF-206ENST00000575068 2667 ntTSL 2 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 MAPK10-261ENST00000641050 3109 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 VTRNA3-1P-201ENST00000362552 102 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 RNA5SP321-201ENST00000362722 111 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 RNA5SP382-201ENST00000363355 112 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 RPL5P20-201ENST00000403848 896 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 SPATA20P1-201ENST00000423089 438 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 AC245884.2-201ENST00000426257 404 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 GAPDHP33-201ENST00000443168 1013 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 GAPDHP20-201ENST00000444107 1007 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 SETP4-201ENST00000455717 868 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 RN7SL37P-201ENST00000490461 307 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 NREP-217ENST00000509025 987 ntTSL 3 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 AC137549.1-201ENST00000514243 533 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 AC093878.1-201ENST00000515630 432 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 NREP-223ENST00000515855 801 ntTSL 4 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 OR4A6P-201ENST00000534364 970 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 GNG2-203ENST00000553432 577 ntTSL 4 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 PPIAP14-201ENST00000577627 496 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 MIR4420-201ENST00000583944 77 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 RPS11-205ENST00000599561 430 ntTSL 5 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 AL137000.1-201ENST00000610528 1244 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 AL138960.1-201ENST00000613838 513 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 AL157762.1-201ENST00000619612 415 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 AL035425.4-201ENST00000624509 1063 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 AC007603.3-201ENST00000636915 979 ntBASIC4.91□□□□□ -1.62
HLA-DMBP28068 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
HLA-DMBP28068 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HLA-DMBP28068 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC4.9□□□□□ -1.62
HLA-DMBP28068 AC011815.2-201ENST00000618230 2021 ntBASIC4.9□□□□□ -1.62
HLA-DMBP28068 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC4.9□□□□□ -1.62
HLA-DMBP28068 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.62
HLA-DMBP28068 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC4.9□□□□□ -1.62
HLA-DMBP28068 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC4.9□□□□□ -1.62
HLA-DMBP28068 AC093297.3-201ENST00000607056 2517 ntBASIC4.9□□□□□ -1.62
HLA-DMBP28068 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 DNM1P47-203ENST00000571780 12667 ntBASIC4.9□□□□□ -1.62
HLA-DMBP28068 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC4.9□□□□□ -1.62
HLA-DMBP28068 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC4.9□□□□□ -1.62
HLA-DMBP28068 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HLA-DMBP28068 AP003170.5-201ENST00000397185 335 ntBASIC4.9□□□□□ -1.63
HLA-DMBP28068 AL033519.1-201ENST00000407266 307 ntBASIC4.9□□□□□ -1.63
HLA-DMBP28068 AL353133.1-201ENST00000407695 401 ntBASIC4.9□□□□□ -1.63
HLA-DMBP28068 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC4.9□□□□□ -1.63
HLA-DMBP28068 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HLA-DMBP28068 AHCYP8-201ENST00000425108 209 ntBASIC4.9□□□□□ -1.63
HLA-DMBP28068 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC4.9□□□□□ -1.63
HLA-DMBP28068 TRBV29OR9-2-201ENST00000427589 333 ntBASIC4.9□□□□□ -1.63
HLA-DMBP28068 AC013403.1-201ENST00000436954 263 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms