Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNA5SP441-201ENST00000516809 88 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 NPIPB14P-203ENST00000532298 987 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 AC006512.2-201ENST00000543250 486 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.3□□□□□ -1.4
HOXC4P09017 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.3□□□□□ -1.4
HOXC4P09017 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXC4P09017 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.3□□□□□ -1.4
HOXC4P09017 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXC4P09017 AC005332.4-201ENST00000592752 579 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 AL352984.2-201ENST00000611153 546 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 MRPL57P1-201ENST00000621486 265 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 AC073592.6-201ENST00000624271 415 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXC4P09017 AL132640.3-201ENST00000630473 177 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 AL357140.4-201ENST00000636827 412 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXC4P09017 OR7E91P-202ENST00000642062 1198 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXC4P09017 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 AP002833.3-201ENST00000625075 2265 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.3□□□□□ -1.4
HOXC4P09017 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.3□□□□□ -1.4
HOXC4P09017 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.3□□□□□ -1.4
HOXC4P09017 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
HOXC4P09017 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
HOXC4P09017 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
HOXC4P09017 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
HOXC4P09017 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
HOXC4P09017 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
HOXC4P09017 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXC4P09017 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
HOXC4P09017 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
HOXC4P09017 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXC4P09017 AC112492.2-201ENST00000432774 1030 ntBASIC6.29□□□□□ -1.4
HOXC4P09017 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.29□□□□□ -1.4
HOXC4P09017 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.29□□□□□ -1.4
HOXC4P09017 AC026254.2-201ENST00000475295 371 ntBASIC6.29□□□□□ -1.4
HOXC4P09017 OR4D12P-201ENST00000509361 911 ntBASIC6.29□□□□□ -1.4
HOXC4P09017 AC010343.2-201ENST00000510162 224 ntBASIC6.29□□□□□ -1.4
HOXC4P09017 SNX18P25-201ENST00000510539 758 ntBASIC6.29□□□□□ -1.4
HOXC4P09017 AC011853.1-201ENST00000518911 454 ntBASIC6.29□□□□□ -1.4
HOXC4P09017 COX6B1P4-201ENST00000519826 484 ntBASIC6.29□□□□□ -1.4
HOXC4P09017 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC6.29□□□□□ -1.4
HOXC4P09017 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.29□□□□□ -1.4
HOXC4P09017 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 AL513218.1-201ENST00000606527 391 ntBASIC6.29□□□□□ -1.4
HOXC4P09017 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
HOXC4P09017 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXC4P09017 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXC4P09017 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXC4P09017 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.29□□□□□ -1.4
HOXC4P09017 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
HOXC4P09017 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXC4P09017 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXC4P09017 AC008957.3-201ENST00000624112 2242 ntBASIC6.29□□□□□ -1.4
HOXC4P09017 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXC4P09017 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
HOXC4P09017 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC4P09017 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
HOXC4P09017 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
HOXC4P09017 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC6.28□□□□□ -1.4
HOXC4P09017 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXC4P09017 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
HOXC4P09017 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC6.28□□□□□ -1.4
HOXC4P09017 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXC4P09017 AL031123.3-201ENST00000623345 1837 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
HOXC4P09017 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms