Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC010342.1-201ENST00000514047 877 ntBASIC7.61□□□□□ -1.19
MSX1P28360 SNORA31.13-201ENST00000516624 135 ntBASIC7.61□□□□□ -1.19
MSX1P28360 AC022695.2-201ENST00000518042 768 ntTSL 3 BASIC7.61□□□□□ -1.19
MSX1P28360 LINC01606-205ENST00000519314 562 ntTSL 4 BASIC7.61□□□□□ -1.19
MSX1P28360 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 AC103681.2-201ENST00000527450 567 ntTSL 4 BASIC7.61□□□□□ -1.19
MSX1P28360 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 PTPRJ-AS1-201ENST00000533964 301 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC7.61□□□□□ -1.19
MSX1P28360 LYZ-202ENST00000548839 558 ntTSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 APOC2-202ENST00000585786 880 ntTSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 AC011444.4-201ENST00000586415 418 ntBASIC7.61□□□□□ -1.19
MSX1P28360 APOC2-204ENST00000591597 447 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 AC010320.1-201ENST00000599775 578 ntTSL 3 BASIC7.61□□□□□ -1.19
MSX1P28360 AC012640.3-201ENST00000607847 430 ntBASIC7.61□□□□□ -1.19
MSX1P28360 MIR6736-201ENST00000616799 59 ntBASIC7.61□□□□□ -1.19
MSX1P28360 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC7.61□□□□□ -1.19
MSX1P28360 AC009033.1-201ENST00000624279 431 ntBASIC7.61□□□□□ -1.19
MSX1P28360 AC007221.2-201ENST00000634367 948 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 AC087821.2-201ENST00000637086 450 ntBASIC7.61□□□□□ -1.19
MSX1P28360 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
MSX1P28360 FOLH1-213ENST00000533034 2225 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 IPP-202ENST00000396478 3113 ntAPPRIS P1 TSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 SMIM31-201ENST00000507311 3123 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 INTS7-201ENST00000366992 3380 ntTSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 OSBPL9-202ENST00000371714 3352 ntAPPRIS ALT1 TSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 LINC02102-201ENST00000503989 3364 ntTSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 PARP15-201ENST00000310366 1518 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 NCOA4P2-201ENST00000340589 1813 ntBASIC7.61□□□□□ -1.19
MSX1P28360 MSN-201ENST00000360270 3944 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 AP4S1-204ENST00000542754 4243 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 APOL3-202ENST00000361710 3563 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 AC010200.1-201ENST00000547380 1454 ntBASIC7.61□□□□□ -1.19
MSX1P28360 OR14J1-203ENST00000641895 6443 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
MSX1P28360 FAM107B-201ENST00000181796 3785 ntTSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 EIF3H-201ENST00000276682 2041 ntTSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 AL391095.1-201ENST00000422519 2004 ntTSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 BTBD3-214ENST00000618296 4582 ntAPPRIS ALT1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 HEATR6-201ENST00000184956 3932 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 ANXA2-202ENST00000396024 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 EPN2-204ENST00000395620 3860 ntAPPRIS ALT1 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 FSD1L-202ENST00000374710 7664 ntTSL 2 BASIC7.6□□□□□ -1.19
MSX1P28360 ATP13A4-201ENST00000295548 2157 ntTSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 FMO5-202ENST00000369272 2168 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 AL359694.2-201ENST00000567753 1615 ntBASIC7.6□□□□□ -1.19
MSX1P28360 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 PCBD2-204ENST00000512783 5621 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 NUP37-209ENST00000552283 2372 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 TCF4-241ENST00000568740 2628 ntTSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 IFT46-201ENST00000264020 1819 ntTSL 2 BASIC7.6□□□□□ -1.19
MSX1P28360 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 DEFB105A-201ENST00000334773 330 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 RNA5SP27-201ENST00000363839 119 ntBASIC7.6□□□□□ -1.19
MSX1P28360 Y_RNA.263-201ENST00000364659 114 ntBASIC7.6□□□□□ -1.19
MSX1P28360 LY6G6D-223ENST00000375825 402 ntAPPRIS P2 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 LST1-211ENST00000376110 433 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 RACK1-201ENST00000376817 965 ntTSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 RNU6-31P-201ENST00000384388 108 ntBASIC7.6□□□□□ -1.19
MSX1P28360 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
MSX1P28360 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC7.6□□□□□ -1.19
MSX1P28360 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 AL035045.1-201ENST00000425405 632 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 RPS10P2-201ENST00000430953 494 ntBASIC7.6□□□□□ -1.19
MSX1P28360 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 WDR82P1-201ENST00000439836 939 ntBASIC7.6□□□□□ -1.19
MSX1P28360 AC012501.1-201ENST00000454312 555 ntTSL 4 BASIC7.6□□□□□ -1.19
MSX1P28360 AL354872.1-201ENST00000456361 967 ntBASIC7.6□□□□□ -1.19
MSX1P28360 AL034397.1-201ENST00000456392 908 ntBASIC7.6□□□□□ -1.19
MSX1P28360 AC013267.1-201ENST00000458227 267 ntBASIC7.6□□□□□ -1.19
MSX1P28360 ALG13-211ENST00000473389 693 ntTSL 2 BASIC7.6□□□□□ -1.19
MSX1P28360 VPS26AP1-201ENST00000483197 979 ntBASIC7.6□□□□□ -1.19
MSX1P28360 HMGB1P44-201ENST00000508597 572 ntBASIC7.6□□□□□ -1.19
MSX1P28360 ATP1B1P1-201ENST00000509767 915 ntBASIC7.6□□□□□ -1.19
MSX1P28360 MTND6P17-201ENST00000511811 519 ntBASIC7.6□□□□□ -1.19
MSX1P28360 AC083906.4-201ENST00000514634 987 ntBASIC7.6□□□□□ -1.19
MSX1P28360 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 MTCO1P35-201ENST00000515270 228 ntBASIC7.6□□□□□ -1.19
MSX1P28360 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
MSX1P28360 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC7.6□□□□□ -1.19
MSX1P28360 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC7.6□□□□□ -1.19
MSX1P28360 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC7.6□□□□□ -1.19
MSX1P28360 RNF185-AS1-201ENST00000526089 353 ntBASIC7.6□□□□□ -1.19
MSX1P28360 LINC02489-201ENST00000527239 354 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 PDCL3P1-201ENST00000534575 734 ntBASIC7.6□□□□□ -1.19
MSX1P28360 AC055736.1-201ENST00000548135 629 ntTSL 3 BASIC7.6□□□□□ -1.19
MSX1P28360 LINC02322-201ENST00000554773 338 ntTSL 2 BASIC7.6□□□□□ -1.19
MSX1P28360 AC008870.2-201ENST00000568262 1024 ntBASIC7.6□□□□□ -1.19
MSX1P28360 AC015853.3-201ENST00000570974 478 ntTSL 4 BASIC7.6□□□□□ -1.19
MSX1P28360 AC006120.1-201ENST00000579375 546 ntBASIC7.6□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms