Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 BNIP3P32-201ENST00000600015 554 ntBASIC10.43□□□□□ -0.74
CUX1P39880 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 OR7A1P-202ENST00000641542 1158 ntBASIC10.43□□□□□ -0.74
CUX1P39880 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC10.43□□□□□ -0.74
CUX1P39880 AC027088.4-201ENST00000611559 1947 ntBASIC10.43□□□□□ -0.74
CUX1P39880 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC10.43□□□□□ -0.74
CUX1P39880 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 DAZ1-202ENST00000405239 4421 ntAPPRIS P5 TSL 1 (best) BASIC10.43□□□□□ -0.74
CUX1P39880 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CUX1P39880 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CUX1P39880 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC10.43□□□□□ -0.74
CUX1P39880 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CUX1P39880 AMELX-201ENST00000348912 737 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 SNORA64.1-201ENST00000362600 132 ntBASIC10.43□□□□□ -0.74
CUX1P39880 BX119321.1-201ENST00000428912 797 ntBASIC10.43□□□□□ -0.74
CUX1P39880 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC10.43□□□□□ -0.74
CUX1P39880 SBDSP1-204ENST00000453858 737 ntBASIC10.43□□□□□ -0.74
CUX1P39880 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 NPM1P27-201ENST00000502784 830 ntBASIC10.43□□□□□ -0.74
CUX1P39880 AC084337.1-201ENST00000524809 686 ntBASIC10.43□□□□□ -0.74
CUX1P39880 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC10.43□□□□□ -0.74
CUX1P39880 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX1P39880 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC10.43□□□□□ -0.74
CUX1P39880 AL645933.2-201ENST00000606743 1207 ntBASIC10.43□□□□□ -0.74
CUX1P39880 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CUX1P39880 AC116631.1-202ENST00000640984 683 ntBASIC10.43□□□□□ -0.74
CUX1P39880 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX1P39880 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC10.42□□□□□ -0.74
CUX1P39880 GRIP1-201ENST00000359742 5216 ntTSL 5 BASIC10.42□□□□□ -0.74
CUX1P39880 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
CUX1P39880 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC10.42□□□□□ -0.74
CUX1P39880 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CUX1P39880 CRP-204ENST00000368112 787 ntTSL 2 BASIC10.42□□□□□ -0.74
CUX1P39880 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
CUX1P39880 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX1P39880 TRIM60P16-201ENST00000444048 694 ntBASIC10.42□□□□□ -0.74
CUX1P39880 MYO5BP2-201ENST00000449815 1277 ntBASIC10.42□□□□□ -0.74
CUX1P39880 TSACC-207ENST00000470342 601 ntTSL 2 BASIC10.42□□□□□ -0.74
CUX1P39880 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX1P39880 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC10.42□□□□□ -0.74
CUX1P39880 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC10.42□□□□□ -0.74
CUX1P39880 SMARCE1P3-201ENST00000553649 1231 ntBASIC10.42□□□□□ -0.74
CUX1P39880 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC10.42□□□□□ -0.74
CUX1P39880 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC10.42□□□□□ -0.74
CUX1P39880 AC005244.1-201ENST00000582566 339 ntBASIC10.42□□□□□ -0.74
CUX1P39880 AC015802.2-201ENST00000589690 189 ntBASIC10.42□□□□□ -0.74
CUX1P39880 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX1P39880 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX1P39880 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC10.42□□□□□ -0.74
CUX1P39880 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC10.42□□□□□ -0.74
CUX1P39880 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
CUX1P39880 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC10.41□□□□□ -0.74
CUX1P39880 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX1P39880 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CUX1P39880 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC10.41□□□□□ -0.74
CUX1P39880 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX1P39880 AC009120.2-204ENST00000621548 2032 ntBASIC10.41□□□□□ -0.74
CUX1P39880 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX1P39880 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
CUX1P39880 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
CUX1P39880 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX1P39880 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX1P39880 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX1P39880 LSM5-203ENST00000409782 649 ntTSL 5 BASIC10.41□□□□□ -0.74
CUX1P39880 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC10.41□□□□□ -0.74
CUX1P39880 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC10.41□□□□□ -0.74
CUX1P39880 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC10.41□□□□□ -0.74
CUX1P39880 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC10.41□□□□□ -0.74
CUX1P39880 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC10.41□□□□□ -0.74
CUX1P39880 AC092865.4-201ENST00000477936 615 ntBASIC10.41□□□□□ -0.74
CUX1P39880 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC10.41□□□□□ -0.74
CUX1P39880 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CUX1P39880 AC092865.1-201ENST00000544395 1023 ntBASIC10.41□□□□□ -0.74
CUX1P39880 MIR3189-201ENST00000578735 73 ntBASIC10.41□□□□□ -0.74
CUX1P39880 AL136131.3-201ENST00000607600 188 ntBASIC10.41□□□□□ -0.74
CUX1P39880 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC10.41□□□□□ -0.74
CUX1P39880 OR8G3P-202ENST00000641572 1255 ntBASIC10.41□□□□□ -0.74
CUX1P39880 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CUX1P39880 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX1P39880 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC10.41□□□□□ -0.74
CUX1P39880 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC10.41□□□□□ -0.74
CUX1P39880 MKI67-202ENST00000368654 12678 ntAPPRIS P3 TSL 2 BASIC10.41□□□□□ -0.74
CUX1P39880 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC10.41□□□□□ -0.74
CUX1P39880 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
CUX1P39880 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC10.4□□□□□ -0.74
CUX1P39880 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
CUX1P39880 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC10.4□□□□□ -0.74
CUX1P39880 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
CUX1P39880 SLC16A4-210ENST00000541986 2496 ntTSL 2 BASIC10.4□□□□□ -0.74
CUX1P39880 LCA5-201ENST00000369846 4542 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
CUX1P39880 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
CUX1P39880 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
CUX1P39880 RPS3AP2-201ENST00000407190 754 ntBASIC10.4□□□□□ -0.74
CUX1P39880 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC10.4□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms