Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CCT8P1-201ENST00000413611 1657 ntBASIC8.34□□□□□ -1.08
TRAIPQ9BWF2 KIT-201ENST00000288135 5186 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 SEL1L3-201ENST00000264868 4369 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 FOLH1B-202ENST00000529567 2145 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 HRH1-203ENST00000431010 4278 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 PIBF1-208ENST00000617689 2882 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 COX10-AS1-201ENST00000423323 3000 ntTSL 2 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 LINC01206-202ENST00000474045 2240 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC245177.1-201ENST00000375625 2369 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC239585.1-201ENST00000375644 2369 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 MTPN-201ENST00000393085 3738 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 HIST1H4F-201ENST00000244537 312 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 PIP-201ENST00000291009 585 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 RNU6-353P-201ENST00000364266 108 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 LL22NC01-81G9.3-201ENST00000400221 992 ntTSL 2 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 RN7SKP117-201ENST00000410175 264 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 YWHAEP5-201ENST00000431545 765 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC019055.1-201ENST00000432822 443 ntTSL 3 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 UBQLN1P1-207ENST00000441056 1169 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 RNU7-140P-201ENST00000459546 60 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 HLTF-AS1-201ENST00000492461 415 ntTSL 3 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 FTH1P23-201ENST00000492727 550 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 CYB5A-204ENST00000494131 776 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC082651.2-201ENST00000496833 166 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC091860.1-201ENST00000505723 432 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC010409.2-201ENST00000505780 478 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 RN7SKP105-201ENST00000517192 314 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC083923.1-201ENST00000523708 376 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC055860.1-201ENST00000525523 688 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 KCTD9P4-201ENST00000526766 1166 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 OR7E96P-201ENST00000530816 976 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AL049869.4-201ENST00000555669 178 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 APEX1-214ENST00000557054 888 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 NR2F2-AS1-205ENST00000559505 1005 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC012291.1-201ENST00000559666 429 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 LINC01989-201ENST00000566930 1081 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 MED31-202ENST00000574128 619 ntTSL 3 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC090241.1-201ENST00000587732 621 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AL513548.2-201ENST00000602994 1207 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC004852.1-201ENST00000605206 154 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AL583856.2-201ENST00000606298 543 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AL022238.3-201ENST00000609279 443 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AC018992.1-201ENST00000523778 2149 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 LINC02511-201ENST00000505736 1668 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 VEZF1P1-201ENST00000423931 1541 ntBASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 OR2T35-202ENST00000641268 2957 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AGBL4-203ENST00000371838 1353 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 PABPC5-201ENST00000312600 3221 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 PIWIL2-204ENST00000521356 3488 ntTSL 2 BASIC8.33□□□□□ -1.08
TRAIPQ9BWF2 AL137100.1-201ENST00000556703 1620 ntBASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 AC100871.1-201ENST00000507871 1456 ntBASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 AL512310.3-201ENST00000547023 1335 ntBASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 MBTPS2-201ENST00000365779 4457 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 CYP4A11-201ENST00000310638 2530 ntAPPRIS P2 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 TRIM60P14-201ENST00000513444 1419 ntBASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 LARGE-AS1-203ENST00000438159 2618 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 ZNF680-201ENST00000309683 3022 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 BSPH1-201ENST00000344839 654 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 AC074375.1-201ENST00000372993 192 ntBASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 AC073842.1-201ENST00000376482 342 ntTSL 5 BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 IGHV4-59-201ENST00000390629 495 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC8.32□□□□□ -1.08
TRAIPQ9BWF2 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC8.32□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms