Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 RPSAP24-201ENST00000461543 873 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 RPS16P9-201ENST00000477220 427 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 TFP1-203ENST00000490470 561 ntTSL 4 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC114956.3-202ENST00000505645 482 ntTSL 5 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 IGKV2D-38-201ENST00000518423 240 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AL109628.1-201ENST00000556877 366 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 HMGN1P26-201ENST00000558737 303 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC010761.3-201ENST00000578819 499 ntTSL 3 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC010519.1-201ENST00000599924 344 ntTSL 5 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC091193.1-201ENST00000604640 448 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 AL352984.2-201ENST00000611153 546 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 NF1P10-201ENST00000613227 742 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 GBA3-207ENST00000613293 1233 ntTSL 5 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 HSP90AA2P-201ENST00000530115 2196 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC078880.4-201ENST00000617627 1749 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AL049697.3-201ENST00000406493 982 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AL663061.1-201ENST00000416625 580 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 RPS7P12-201ENST00000422385 582 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 SNRPEP5-201ENST00000425442 278 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC009518.3-201ENST00000438972 253 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC068491.1-201ENST00000449539 1241 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 HNRNPDLP2-201ENST00000455248 751 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 OR7E7P-201ENST00000455678 1012 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 RN7SL654P-201ENST00000479178 292 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 SCG5-207ENST00000497208 949 ntTSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC096661.1-201ENST00000515870 822 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 RNU6ATAC39P-201ENST00000516309 149 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 SCARNA11.1-201ENST00000516918 132 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 RNA5SP278-201ENST00000517055 102 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC021733.2-201ENST00000518830 497 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AP000755.1-201ENST00000527100 507 ntTSL 3 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC010287.1-201ENST00000566916 357 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC068152.1-203ENST00000570314 254 ntTSL 3 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 MIR4301-201ENST00000577203 66 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AL356986.1-201ENST00000604085 341 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC015849.6-201ENST00000605454 474 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC106782.7-201ENST00000624024 418 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC018692.2-201ENST00000624130 348 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC133555.5-201ENST00000624430 418 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 AC135068.11-201ENST00000636378 921 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 RFC1-217ENST00000639695 867 ntTSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 AL359263.1-201ENST00000441188 2796 ntBASIC5.69□□□□□ -1.5
NKX3-1Q99801 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
NKX3-1Q99801 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NKX3-1Q99801 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms