Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SLC24A1-212ENST00000546330 3246 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 SERPINB6-205ENST00000380539 1338 ntAPPRIS P1 TSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 SORBS1-208ENST00000371241 2055 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC026464.2-201ENST00000567834 2421 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 OR3A1-201ENST00000323404 1650 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC092111.2-201ENST00000611627 1414 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 ZNF512-208ENST00000556601 3543 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 SORCS1-202ENST00000344440 3009 ntTSL 5 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 MIR30C1-201ENST00000385227 89 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 Y_RNA.582-201ENST00000391023 95 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 RNU6-244P-201ENST00000391028 104 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 RPL17P50-201ENST00000396131 546 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AP002761.1-201ENST00000400985 262 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 PPP1R17-202ENST00000409146 569 ntTSL 2 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC012462.3-201ENST00000412951 131 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC016908.1-201ENST00000442571 1219 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 RPS26P30-201ENST00000443431 335 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 RBMY3AP-201ENST00000449381 1145 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AL096855.1-201ENST00000449895 516 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 SEPT7P3-201ENST00000455017 621 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AL031727.1-201ENST00000457263 455 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 RN7SL420P-201ENST00000463843 298 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC008514.1-201ENST00000521965 602 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 IGKV3-25-201ENST00000523155 253 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC084337.1-201ENST00000524809 686 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 LINC00958-202ENST00000526388 607 ntTSL 2 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC135983.3-201ENST00000528049 1226 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC044839.1-209ENST00000529769 878 ntTSL 5 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC078950.1-204ENST00000540635 523 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 LINC02321-201ENST00000555975 384 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC018618.1-202ENST00000559590 395 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC090607.2-201ENST00000560331 695 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 MIR4528-201ENST00000577763 90 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC008649.2-201ENST00000585999 242 ntTSL 5 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC005262.1-201ENST00000588562 362 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC012065.4-201ENST00000602445 679 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 IGKV3OR2-5-201ENST00000605851 281 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 Metazoa_SRP.98-201ENST00000610878 274 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 Metazoa_SRP.39-201ENST00000614194 271 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 FRG1HP-203ENST00000615326 593 ntTSL 3 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AC067904.3-201ENST00000617126 261 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AL591926.6-201ENST00000617375 415 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 UQCRC2-213ENST00000630839 535 ntTSL 4 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 MORF4L2-203ENST00000422154 1983 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 REG4-203ENST00000369401 2327 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 LINC01060-204ENST00000510832 2435 ntTSL 2 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 TRIO-201ENST00000344135 4065 ntTSL 2 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 AL391261.1-201ENST00000555712 1479 ntBASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 CHN2-208ENST00000412711 2991 ntTSL 2 BASIC7.8□□□□□ -1.16
DEPDC4Q8N2C3 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 CASP12-201ENST00000375726 1306 ntAPPRIS P5 TSL 1 (best) BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 WDR92-202ENST00000406245 1401 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 ING3-204ENST00000431467 1447 ntTSL 2 BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 NPFFR2-204ENST00000395999 1866 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 GPX5-201ENST00000412168 1540 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 MAP3K8-202ENST00000375321 2518 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 PIWIL3-201ENST00000332271 3504 ntAPPRIS P2 TSL 1 (best) BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 OPALIN-203ENST00000393871 3545 ntTSL 2 BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 CU633906.2-201ENST00000624576 2257 ntTSL 5 BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 MIR16-1-201ENST00000385271 89 ntBASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 RPL23AP7-201ENST00000391616 738 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 FCHSD2-202ENST00000409263 932 ntTSL 5 BASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 RNA5SP203-201ENST00000410451 136 ntBASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 MTCO1P17-201ENST00000411522 491 ntBASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 HMGN1P14-201ENST00000412459 517 ntBASIC7.79□□□□□ -1.16
DEPDC4Q8N2C3 Z97055.1-201ENST00000419730 712 ntBASIC7.79□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms