Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 RPLP1P10-201ENST00000413972 339 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC097721.1-201ENST00000427150 1253 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AL356121.1-201ENST00000442911 156 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 RPL26P30-201ENST00000453533 435 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC063955.1-201ENST00000462872 685 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 UOX-201ENST00000471089 899 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC068647.2-202ENST00000485020 390 ntTSL 3 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 RN7SL655P-201ENST00000486087 298 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 RN7SL350P-201ENST00000492591 299 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC026774.2-201ENST00000513990 1098 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 RN7SKP248-201ENST00000516278 305 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 AP005902.2-201ENST00000518393 307 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 LDHC-203ENST00000535809 757 ntTSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC005277.2-201ENST00000617898 390 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC009120.7-201ENST00000623452 780 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC012254.5-201ENST00000623573 478 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC061999.1-201ENST00000624454 177 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC034229.2-201ENST00000566945 2508 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC020658.2-201ENST00000559030 4020 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
HLA-DMBP28068 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
HLA-DMBP28068 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC4.96□□□□□ -1.61
HLA-DMBP28068 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
HLA-DMBP28068 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC4.96□□□□□ -1.61
HLA-DMBP28068 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC4.96□□□□□ -1.61
HLA-DMBP28068 AP004289.1-201ENST00000436307 2205 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HLA-DMBP28068 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
HLA-DMBP28068 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 EEF1A1P24-201ENST00000451469 1378 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 DOCK11P1-201ENST00000553480 5932 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HLA-DMBP28068 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
HLA-DMBP28068 STAG3L4-201ENST00000352103 530 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 RNA5SP188-201ENST00000362916 129 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 SNORA38B-201ENST00000363524 131 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 ASPH-204ENST00000389204 1290 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HLA-DMBP28068 AL034417.1-201ENST00000399343 800 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 SSR1P1-201ENST00000407630 814 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 RPL18AP14-201ENST00000417685 526 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 PA2G4P1-201ENST00000442248 1197 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC104162.1-204ENST00000443346 708 ntTSL 3 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC022080.2-201ENST00000452932 533 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 CEACAMP11-201ENST00000455211 583 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 CCNJP2-201ENST00000457810 1163 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC236972.4-201ENST00000458091 963 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 MRPL57P6-201ENST00000506570 309 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC087273.2-201ENST00000519038 634 ntTSL 3 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 RAB30-209ENST00000532548 644 ntTSL 3 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 SETP17-201ENST00000534163 817 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 AC007068.2-201ENST00000543168 395 ntBASIC4.96□□□□□ -1.62
HLA-DMBP28068 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC4.96□□□□□ -1.62
HLA-DMBP28068 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HLA-DMBP28068 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HLA-DMBP28068 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms