Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC016144.1-201ENST00000548175 1087 ntBASIC6.89□□□□□ -1.31
DKK3Q9UBP4 FXNP1-201ENST00000555153 337 ntBASIC6.89□□□□□ -1.31
DKK3Q9UBP4 HMGN2P47-201ENST00000559378 272 ntBASIC6.89□□□□□ -1.31
DKK3Q9UBP4 AP003789.1-201ENST00000617737 605 ntBASIC6.89□□□□□ -1.31
DKK3Q9UBP4 AC023510.2-201ENST00000622162 746 ntBASIC6.89□□□□□ -1.31
DKK3Q9UBP4 AL359742.1-201ENST00000622497 540 ntBASIC6.89□□□□□ -1.31
DKK3Q9UBP4 AC069542.2-201ENST00000624816 216 ntBASIC6.89□□□□□ -1.31
DKK3Q9UBP4 MBD5-221ENST00000637159 902 ntTSL 5 BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
DKK3Q9UBP4 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 CYP2G2P-201ENST00000594920 1485 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AP003175.1-201ENST00000641383 6658 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 RPL12P13-201ENST00000310055 497 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 ARSFP1-201ENST00000398758 477 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 MORF4L1P5-201ENST00000433352 961 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC234771.4-201ENST00000441416 730 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 LINC00349-201ENST00000448748 841 ntTSL 5 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC022080.2-201ENST00000452932 533 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 NPM1P9-201ENST00000453156 844 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AL358876.1-201ENST00000453364 1075 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 SNX18P23-201ENST00000510867 677 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 IGLVVII-41-1-201ENST00000518405 151 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 SETP17-201ENST00000534163 817 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 CHEK2P2-201ENST00000554701 672 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AL590032.1-201ENST00000604920 252 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC017076.1-201ENST00000607613 578 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC241377.1-201ENST00000619797 406 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC025287.2-201ENST00000621911 668 ntBASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.88□□□□□ -1.31
DKK3Q9UBP4 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 AC004023.1-201ENST00000561473 1744 ntBASIC6.87□□□□□ -1.31
DKK3Q9UBP4 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 AC079248.1-201ENST00000427568 1546 ntBASIC6.87□□□□□ -1.31
DKK3Q9UBP4 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
DKK3Q9UBP4 RN7SKP186-201ENST00000365371 303 ntBASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 153.7 ms