Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC7.85□□□□□ -1.15
COL5A3P25940 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 MAP3K9-207ENST00000611979 10497 ntTSL 5 BASIC7.85□□□□□ -1.15
COL5A3P25940 CUX1-201ENST00000292535 13747 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 ZNF37BP-202ENST00000452075 8637 ntTSL 2 BASIC7.85□□□□□ -1.15
COL5A3P25940 FAM26E-201ENST00000368599 9784 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 FAT3-206ENST00000533797 7894 ntTSL 2 BASIC7.85□□□□□ -1.15
COL5A3P25940 PLAGL1-202ENST00000360537 4430 ntAPPRIS P1 TSL 5 BASIC7.85□□□□□ -1.15
COL5A3P25940 OR2M1P-201ENST00000318104 951 ntBASIC7.85□□□□□ -1.15
COL5A3P25940 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC7.85□□□□□ -1.15
COL5A3P25940 MIR143-201ENST00000385300 106 ntBASIC7.85□□□□□ -1.15
COL5A3P25940 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC7.85□□□□□ -1.15
COL5A3P25940 OR7E101P-201ENST00000400428 513 ntBASIC7.85□□□□□ -1.15
COL5A3P25940 DPPA2P3-201ENST00000411853 655 ntBASIC7.85□□□□□ -1.15
COL5A3P25940 AL035660.1-201ENST00000422041 222 ntBASIC7.85□□□□□ -1.15
COL5A3P25940 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC7.85□□□□□ -1.15
COL5A3P25940 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC7.85□□□□□ -1.15
COL5A3P25940 AC016027.4-201ENST00000450866 277 ntBASIC7.85□□□□□ -1.15
COL5A3P25940 UBA52P7-201ENST00000486088 380 ntBASIC7.85□□□□□ -1.15
COL5A3P25940 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC7.85□□□□□ -1.15
COL5A3P25940 ATG10-208ENST00000513634 618 ntTSL 2 BASIC7.85□□□□□ -1.15
COL5A3P25940 AC079600.1-201ENST00000550326 297 ntBASIC7.85□□□□□ -1.15
COL5A3P25940 AC104695.2-201ENST00000605056 775 ntBASIC7.85□□□□□ -1.15
COL5A3P25940 AC069234.4-201ENST00000621276 412 ntBASIC7.85□□□□□ -1.15
COL5A3P25940 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC7.85□□□□□ -1.15
COL5A3P25940 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 TNR-202ENST00000367674 12949 ntAPPRIS P1 TSL 5 BASIC7.85□□□□□ -1.15
COL5A3P25940 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC7.85□□□□□ -1.15
COL5A3P25940 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC7.85□□□□□ -1.15
COL5A3P25940 ATL3-201ENST00000398868 7135 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC7.85□□□□□ -1.15
COL5A3P25940 FGG-205ENST00000407946 1636 ntTSL 5 BASIC7.85□□□□□ -1.15
COL5A3P25940 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC7.85□□□□□ -1.15
COL5A3P25940 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL5A3P25940 BSN-201ENST00000296452 15955 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL5A3P25940 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL5A3P25940 EPHA5-201ENST00000273854 8266 ntAPPRIS P4 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL5A3P25940 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL5A3P25940 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL5A3P25940 FUNDC2P3-201ENST00000334716 533 ntBASIC7.84□□□□□ -1.15
COL5A3P25940 OR3A2-201ENST00000408891 1076 ntBASIC7.84□□□□□ -1.15
COL5A3P25940 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL5A3P25940 GTF3AP1-201ENST00000416942 1004 ntBASIC7.84□□□□□ -1.15
COL5A3P25940 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC7.84□□□□□ -1.15
COL5A3P25940 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC7.84□□□□□ -1.15
COL5A3P25940 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC7.84□□□□□ -1.15
COL5A3P25940 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC7.84□□□□□ -1.15
COL5A3P25940 MORF4-201ENST00000447135 971 ntBASIC7.84□□□□□ -1.15
COL5A3P25940 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL5A3P25940 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL5A3P25940 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC7.84□□□□□ -1.15
COL5A3P25940 AC092865.1-201ENST00000544395 1023 ntBASIC7.84□□□□□ -1.15
COL5A3P25940 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC7.84□□□□□ -1.15
COL5A3P25940 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC7.84□□□□□ -1.15
COL5A3P25940 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC7.84□□□□□ -1.15
COL5A3P25940 AC015802.2-201ENST00000589690 189 ntBASIC7.84□□□□□ -1.15
COL5A3P25940 OR8G3P-202ENST00000641572 1255 ntBASIC7.84□□□□□ -1.15
COL5A3P25940 ZNF844-201ENST00000439326 6620 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL5A3P25940 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
COL5A3P25940 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC7.84□□□□□ -1.15
COL5A3P25940 SLC16A4-210ENST00000541986 2496 ntTSL 2 BASIC7.84□□□□□ -1.15
COL5A3P25940 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC7.84□□□□□ -1.15
COL5A3P25940 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
COL5A3P25940 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.16
COL5A3P25940 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.16
COL5A3P25940 PLEC-207ENST00000398774 14646 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.16
COL5A3P25940 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC7.84□□□□□ -1.16
COL5A3P25940 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL5A3P25940 AC245096.1-201ENST00000413104 546 ntBASIC7.83□□□□□ -1.16
COL5A3P25940 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC7.83□□□□□ -1.16
COL5A3P25940 DEFA9P-201ENST00000433042 285 ntBASIC7.83□□□□□ -1.16
COL5A3P25940 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC7.83□□□□□ -1.16
COL5A3P25940 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC7.83□□□□□ -1.16
COL5A3P25940 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC7.83□□□□□ -1.16
COL5A3P25940 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC7.83□□□□□ -1.16
COL5A3P25940 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC7.83□□□□□ -1.16
COL5A3P25940 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC7.83□□□□□ -1.16
COL5A3P25940 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC7.83□□□□□ -1.16
COL5A3P25940 AC018445.2-201ENST00000622987 260 ntBASIC7.83□□□□□ -1.16
COL5A3P25940 AC020763.5-201ENST00000623298 430 ntBASIC7.83□□□□□ -1.16
COL5A3P25940 AC027088.4-201ENST00000611559 1947 ntBASIC7.83□□□□□ -1.16
COL5A3P25940 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL5A3P25940 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
COL5A3P25940 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL5A3P25940 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL5A3P25940 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
COL5A3P25940 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL5A3P25940 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL5A3P25940 SHTN1-207ENST00000615301 6730 ntAPPRIS P3 TSL 1 (best) BASIC7.83□□□□□ -1.16
COL5A3P25940 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
COL5A3P25940 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC7.83□□□□□ -1.16
COL5A3P25940 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
COL5A3P25940 RNU6-171P-201ENST00000384354 107 ntBASIC7.83□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms