Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
VMP1Q96GC9 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.53□□□□□ -1.36
VMP1Q96GC9 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.53□□□□□ -1.36
VMP1Q96GC9 SLC2A3P4-201ENST00000521259 1471 ntBASIC6.53□□□□□ -1.36
VMP1Q96GC9 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
VMP1Q96GC9 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.53□□□□□ -1.36
VMP1Q96GC9 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.53□□□□□ -1.36
VMP1Q96GC9 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
VMP1Q96GC9 AC079949.2-201ENST00000617117 2933 ntBASIC6.53□□□□□ -1.36
VMP1Q96GC9 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
VMP1Q96GC9 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC6.53□□□□□ -1.36
VMP1Q96GC9 AC011504.1-201ENST00000623331 4103 ntBASIC6.52□□□□□ -1.36
VMP1Q96GC9 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC125336.1-201ENST00000508893 2827 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 PARP4P1-201ENST00000435945 2337 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 MIR99A-201ENST00000384906 81 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 MIR187-201ENST00000385062 109 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 CDY17P-201ENST00000414121 1282 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 CDY8P-201ENST00000428380 1279 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC007365.2-201ENST00000428806 458 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 CDY20P-201ENST00000447528 1279 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 OR51P1P-201ENST00000447547 942 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 AL079303.1-201ENST00000486611 463 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC017007.1-201ENST00000511960 415 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 RN7SKP11-201ENST00000517018 287 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 IGLC4-201ENST00000517690 248 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 AZIN1-AS1-211ENST00000520455 480 ntTSL 3 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 IGHVIII-11-1-201ENST00000522733 267 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 IGLVV-66-201ENST00000523818 341 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC021820.1-201ENST00000525564 808 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 OR4A13P-201ENST00000529316 942 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC011447.2-201ENST00000592921 283 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 AC091059.2-201ENST00000623355 614 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
VMP1Q96GC9 CASC19-238ENST00000641523 1558 ntBASIC6.52□□□□□ -1.37
VMP1Q96GC9 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VMP1Q96GC9 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
VMP1Q96GC9 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
VMP1Q96GC9 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 AKAP17BP-201ENST00000431706 2719 ntBASIC6.51□□□□□ -1.37
VMP1Q96GC9 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.51□□□□□ -1.37
VMP1Q96GC9 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
VMP1Q96GC9 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 RN7SKP62-201ENST00000384539 329 ntBASIC6.51□□□□□ -1.37
VMP1Q96GC9 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
VMP1Q96GC9 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC6.51□□□□□ -1.37
VMP1Q96GC9 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
VMP1Q96GC9 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC6.51□□□□□ -1.37
VMP1Q96GC9 RPL23AP18-201ENST00000416139 468 ntBASIC6.51□□□□□ -1.37
VMP1Q96GC9 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC6.51□□□□□ -1.37
VMP1Q96GC9 AC091492.1-201ENST00000419844 272 ntBASIC6.51□□□□□ -1.37
VMP1Q96GC9 CHCHD4P5-201ENST00000436684 427 ntBASIC6.51□□□□□ -1.37
VMP1Q96GC9 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC6.51□□□□□ -1.37
VMP1Q96GC9 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms