Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CIR1P2-201ENST00000514821 1342 ntBASIC6.62□□□□□ -1.35
MSX2P35548 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX2P35548 RNU6-1017P-201ENST00000363613 106 ntBASIC6.62□□□□□ -1.35
MSX2P35548 FAM204BP-201ENST00000369171 701 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AC020983.1-201ENST00000417063 543 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AL607028.1-201ENST00000433455 794 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX2P35548 AL606752.1-201ENST00000435442 666 ntBASIC6.62□□□□□ -1.35
MSX2P35548 LINC00578-201ENST00000439009 542 ntTSL 4 BASIC6.62□□□□□ -1.35
MSX2P35548 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX2P35548 SETD6P1-201ENST00000444575 317 ntBASIC6.62□□□□□ -1.35
MSX2P35548 MOB1AP2-201ENST00000446060 614 ntBASIC6.62□□□□□ -1.35
MSX2P35548 FAM155A-IT1-201ENST00000449551 819 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX2P35548 RPS29P5-201ENST00000452777 171 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX2P35548 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC6.62□□□□□ -1.35
MSX2P35548 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC6.62□□□□□ -1.35
MSX2P35548 AC109454.1-201ENST00000471205 498 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AC074386.1-206ENST00000487102 761 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AP000563.1-201ENST00000490865 758 ntBASIC6.62□□□□□ -1.35
MSX2P35548 RN7SL608P-201ENST00000492377 279 ntBASIC6.62□□□□□ -1.35
MSX2P35548 FTH1P8-201ENST00000498161 514 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX2P35548 AC112184.1-201ENST00000505179 312 ntBASIC6.62□□□□□ -1.35
MSX2P35548 RNA5SP422-201ENST00000516778 111 ntBASIC6.62□□□□□ -1.35
MSX2P35548 CHCHD7-205ENST00000517933 580 ntAPPRIS P1 TSL 4 BASIC6.62□□□□□ -1.35
MSX2P35548 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC6.62□□□□□ -1.35
MSX2P35548 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX2P35548 CHCHD7-215ENST00000523061 557 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX2P35548 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC6.62□□□□□ -1.35
MSX2P35548 AC084851.2-201ENST00000530377 364 ntBASIC6.62□□□□□ -1.35
MSX2P35548 NUTF2P2-201ENST00000551207 384 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AL591767.3-201ENST00000554632 525 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AL355076.3-201ENST00000555838 587 ntBASIC6.62□□□□□ -1.35
MSX2P35548 TTN-AS1-215ENST00000585451 949 ntTSL 5 BASIC6.62□□□□□ -1.35
MSX2P35548 SNRPCP20-201ENST00000588011 210 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AC245036.5-201ENST00000596330 847 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX2P35548 RPP40P2-201ENST00000603596 712 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AL683813.2-201ENST00000605245 502 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AL356052.1-201ENST00000605764 376 ntBASIC6.62□□□□□ -1.35
MSX2P35548 TATDN1-220ENST00000605953 726 ntTSL 2 BASIC6.62□□□□□ -1.35
MSX2P35548 AC023310.4-201ENST00000613130 650 ntBASIC6.62□□□□□ -1.35
MSX2P35548 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC6.62□□□□□ -1.35
MSX2P35548 CCDC196-207ENST00000636229 1107 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
MSX2P35548 AC068205.4-201ENST00000637880 804 ntBASIC6.62□□□□□ -1.35
MSX2P35548 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX2P35548 LINC01616-201ENST00000561816 2280 ntBASIC6.62□□□□□ -1.35
MSX2P35548 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX2P35548 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX2P35548 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
MSX2P35548 LRRC37A12P-201ENST00000454917 1801 ntBASIC6.62□□□□□ -1.35
MSX2P35548 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX2P35548 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX2P35548 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.62□□□□□ -1.35
MSX2P35548 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC6.61□□□□□ -1.35
MSX2P35548 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 AL157895.1-201ENST00000451713 1404 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX2P35548 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX2P35548 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX2P35548 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX2P35548 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX2P35548 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX2P35548 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
MSX2P35548 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 SNORA70.8-201ENST00000384231 136 ntBASIC6.61□□□□□ -1.35
MSX2P35548 SNORA35-201ENST00000386104 128 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AP002530.1-201ENST00000405705 684 ntBASIC6.61□□□□□ -1.35
MSX2P35548 LINC01424-201ENST00000417820 1031 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX2P35548 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 AJ239321.1-201ENST00000424255 564 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AC092865.3-201ENST00000425390 1026 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX2P35548 CDH13-203ENST00000431540 831 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
MSX2P35548 MED28P4-201ENST00000433137 572 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC6.61□□□□□ -1.35
MSX2P35548 AL021154.1-201ENST00000451217 456 ntTSL 3 BASIC6.61□□□□□ -1.35
MSX2P35548 PSMA6P2-201ENST00000457574 686 ntBASIC6.61□□□□□ -1.35
MSX2P35548 CMAHP-203ENST00000458373 1101 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 SNORD11.1-201ENST00000459482 85 ntBASIC6.61□□□□□ -1.35
MSX2P35548 BBOF1-202ENST00000463558 550 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
MSX2P35548 NDUFA5P9-201ENST00000472609 340 ntBASIC6.61□□□□□ -1.35
MSX2P35548 OR7E163P-201ENST00000505943 894 ntBASIC6.61□□□□□ -1.35
MSX2P35548 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
MSX2P35548 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
MSX2P35548 RN7SKP5-201ENST00000517045 272 ntBASIC6.61□□□□□ -1.35
MSX2P35548 LINC00967-204ENST00000518412 271 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 AC073581.1-201ENST00000519036 575 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 PPIAL4D-201ENST00000544708 495 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
MSX2P35548 DCN-215ENST00000550099 719 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX2P35548 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC6.61□□□□□ -1.35
MSX2P35548 PEX11A-205ENST00000561257 978 ntTSL 2 BASIC6.61□□□□□ -1.35
MSX2P35548 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC6.61□□□□□ -1.35
MSX2P35548 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
MSX2P35548 MIR4642-201ENST00000583943 82 ntBASIC6.61□□□□□ -1.35
MSX2P35548 AC005537.1-202ENST00000585996 666 ntTSL 5 BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms