Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
NKX3-1Q99801 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 CASC19-228ENST00000641414 1684 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
NKX3-1Q99801 AC073365.1-203ENST00000641055 1992 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 RNA5SP302-201ENST00000364896 100 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 RNU1-55P-201ENST00000365510 158 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 DNASE1L3-201ENST00000394549 1294 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AC121334.1-201ENST00000396414 802 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 MRPL32P1-201ENST00000406301 247 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 AL451061.1-201ENST00000407887 862 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 RFESDP1-201ENST00000422350 461 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 PAICSP2-201ENST00000429118 1150 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AL445228.1-201ENST00000449525 333 ntTSL 3 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 VNN3-210ENST00000450865 596 ntTSL 4 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AL096803.1-201ENST00000456921 1021 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 AC117395.1-201ENST00000487390 403 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 RPL10P7-201ENST00000495649 625 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 MIR4800-201ENST00000537353 80 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AC018845.1-201ENST00000564193 744 ntTSL 2 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AC007255.2-201ENST00000604053 631 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 AC005355.2-201ENST00000625064 484 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 TEX41-271ENST00000628213 993 ntTSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 AL662795.2-201ENST00000624252 3706 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 AKAP17BP-201ENST00000431706 2719 ntBASIC5.74□□□□□ -1.49
NKX3-1Q99801 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
NKX3-1Q99801 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
NKX3-1Q99801 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 SLC2A3P4-201ENST00000521259 1471 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 DNM1P47-203ENST00000571780 12667 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 OR52D1-201ENST00000322641 1065 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 SNORA81-201ENST00000408493 178 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 AL356133.1-201ENST00000444762 372 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 PFN1P11-201ENST00000445829 389 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 AC239804.1-201ENST00000466343 869 ntTSL 5 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 RN7SL849P-201ENST00000485236 295 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 PFN2-213ENST00000494827 793 ntTSL 4 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 AC011405.1-203ENST00000510110 1067 ntTSL 3 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 AC026774.2-201ENST00000513990 1098 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 AP000426.1-201ENST00000518749 361 ntTSL 3 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 IGHVIII-25-1-201ENST00000522143 241 ntBASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms