Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 GGA1-205ENST00000405147 575 ntTSL 4 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 MIR1266-201ENST00000408125 84 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AL663061.1-201ENST00000416625 580 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AL022324.2-201ENST00000434827 780 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 RPL7AP71-201ENST00000451120 739 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC073476.1-201ENST00000452854 407 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 MTND3P4-201ENST00000453537 303 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 RN7SL492P-201ENST00000460700 295 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC068647.2-202ENST00000485020 390 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 NREP-217ENST00000509025 987 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 NREP-223ENST00000515855 801 ntTSL 4 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 BX322635.1-201ENST00000605804 496 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 U91328.4-201ENST00000608919 517 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC104820.1-201ENST00000624183 307 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AC140479.4-205ENST00000636339 820 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 MAPK10-379ENST00000642013 1385 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 RNF19BPY-201ENST00000458209 1550 ntBASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 RN7SKP130-201ENST00000364924 301 ntBASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 TAAR2-202ENST00000367931 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 RPL12P49-201ENST00000441100 121 ntBASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 AC092601.1-201ENST00000444526 383 ntBASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 AC063943.2-201ENST00000495697 534 ntBASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 AC087752.2-201ENST00000521219 281 ntBASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 ASB8-207ENST00000536953 923 ntTSL 2 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 AC139493.1-201ENST00000604368 397 ntBASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 AL035410.2-201ENST00000604963 864 ntBASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 AC102941.1-201ENST00000567616 1537 ntBASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 AC093227.1-201ENST00000588040 1360 ntTSL 3 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4CQ96CF2 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 AL512329.1-201ENST00000404600 1592 ntBASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 AC008957.3-201ENST00000624112 2242 ntBASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 FANCD2P2-201ENST00000437591 1400 ntBASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
CHMP4CQ96CF2 AL353133.1-201ENST00000407695 401 ntBASIC8.06□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms