Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A1P20908 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A1P20908 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A1P20908 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A1P20908 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
COL5A1P20908 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.21□□□□□ -1.42
COL5A1P20908 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL5A1P20908 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC6.2□□□□□ -1.42
COL5A1P20908 MIR130B-202ENST00000385018 82 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
COL5A1P20908 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.2□□□□□ -1.42
COL5A1P20908 MTND6P12-201ENST00000428247 522 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.2□□□□□ -1.42
COL5A1P20908 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 LDHAP1-201ENST00000509421 992 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 AC006499.4-201ENST00000510947 694 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 IGHV3-57-201ENST00000520143 280 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC6.2□□□□□ -1.42
COL5A1P20908 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC6.2□□□□□ -1.42
COL5A1P20908 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.2□□□□□ -1.42
COL5A1P20908 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.2□□□□□ -1.42
COL5A1P20908 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC6.2□□□□□ -1.42
COL5A1P20908 AC130448.2-201ENST00000624082 374 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC6.2□□□□□ -1.42
COL5A1P20908 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
COL5A1P20908 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 CR1-206ENST00000400960 6959 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 AC125603.4-201ENST00000621942 2699 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
COL5A1P20908 AC096537.2-201ENST00000413707 714 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.2□□□□□ -1.42
COL5A1P20908 RN7SL515P-201ENST00000463999 297 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC6.2□□□□□ -1.42
COL5A1P20908 AC095057.1-201ENST00000507583 168 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.2□□□□□ -1.42
COL5A1P20908 AC112191.2-201ENST00000522428 333 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC6.2□□□□□ -1.42
COL5A1P20908 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC6.2□□□□□ -1.42
COL5A1P20908 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.2□□□□□ -1.42
COL5A1P20908 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.2□□□□□ -1.42
COL5A1P20908 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 AC007346.1-201ENST00000569208 867 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 AC010998.3-201ENST00000613871 631 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 AL512652.1-201ENST00000619006 500 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
COL5A1P20908 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A1P20908 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.2□□□□□ -1.42
COL5A1P20908 AL035530.2-201ENST00000607391 1675 ntTSL 3 BASIC6.2□□□□□ -1.42
COL5A1P20908 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC6.2□□□□□ -1.42
COL5A1P20908 AC092821.3-202ENST00000641304 2767 ntBASIC6.2□□□□□ -1.42
COL5A1P20908 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC6.19□□□□□ -1.42
COL5A1P20908 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A1P20908 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A1P20908 AC084782.1-201ENST00000564401 2465 ntBASIC6.19□□□□□ -1.42
COL5A1P20908 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC6.19□□□□□ -1.42
COL5A1P20908 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A1P20908 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.19□□□□□ -1.42
COL5A1P20908 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.19□□□□□ -1.42
COL5A1P20908 ARMC8-210ENST00000469044 4790 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
COL5A1P20908 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A1P20908 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
COL5A1P20908 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A1P20908 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A1P20908 AL353743.3-201ENST00000442109 1468 ntBASIC6.19□□□□□ -1.42
COL5A1P20908 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
COL5A1P20908 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.19□□□□□ -1.42
COL5A1P20908 CYCSP52-201ENST00000422857 310 ntBASIC6.19□□□□□ -1.42
COL5A1P20908 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A1P20908 SOCS5P1-201ENST00000440415 949 ntBASIC6.19□□□□□ -1.42
COL5A1P20908 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC6.19□□□□□ -1.42
COL5A1P20908 SUMO2P7-201ENST00000511179 285 ntBASIC6.19□□□□□ -1.42
COL5A1P20908 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC6.19□□□□□ -1.42
COL5A1P20908 AC114781.3-201ENST00000512083 142 ntBASIC6.19□□□□□ -1.42
COL5A1P20908 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.19□□□□□ -1.42
COL5A1P20908 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC6.19□□□□□ -1.42
COL5A1P20908 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
COL5A1P20908 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.19□□□□□ -1.42
COL5A1P20908 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.19□□□□□ -1.42
COL5A1P20908 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A1P20908 AC008536.1-201ENST00000602872 669 ntBASIC6.19□□□□□ -1.42
COL5A1P20908 AC025171.4-201ENST00000607250 1047 ntBASIC6.19□□□□□ -1.42
COL5A1P20908 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.19□□□□□ -1.42
COL5A1P20908 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC6.19□□□□□ -1.42
COL5A1P20908 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.19□□□□□ -1.42
COL5A1P20908 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A1P20908 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A1P20908 ABCA9-202ENST00000453985 6116 ntTSL 5 BASIC6.19□□□□□ -1.42
COL5A1P20908 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms