Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.44■□□□□ 0.38
LIME1Q9H400 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.44■□□□□ 0.38
LIME1Q9H400 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.44■□□□□ 0.38
LIME1Q9H400 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
LIME1Q9H400 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.44■□□□□ 0.38
LIME1Q9H400 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LIME1Q9H400 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIME1Q9H400 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIME1Q9H400 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
LIME1Q9H400 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIME1Q9H400 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.43■□□□□ 0.38
LIME1Q9H400 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIME1Q9H400 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIME1Q9H400 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIME1Q9H400 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.43■□□□□ 0.38
LIME1Q9H400 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.43■□□□□ 0.38
LIME1Q9H400 AP003071.4-201ENST00000562276 1284 ntBASIC17.43■□□□□ 0.38
LIME1Q9H400 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.43■□□□□ 0.38
LIME1Q9H400 AC026471.5-201ENST00000615068 467 ntBASIC17.43■□□□□ 0.38
LIME1Q9H400 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
LIME1Q9H400 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LIME1Q9H400 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIME1Q9H400 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIME1Q9H400 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.43■□□□□ 0.38
LIME1Q9H400 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIME1Q9H400 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
LIME1Q9H400 AC027702.1-201ENST00000563810 1770 ntBASIC17.43■□□□□ 0.38
LIME1Q9H400 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIME1Q9H400 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIME1Q9H400 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
LIME1Q9H400 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.42■□□□□ 0.38
LIME1Q9H400 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.42■□□□□ 0.38
LIME1Q9H400 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
LIME1Q9H400 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
LIME1Q9H400 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.42■□□□□ 0.38
LIME1Q9H400 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.42■□□□□ 0.38
LIME1Q9H400 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.42■□□□□ 0.38
LIME1Q9H400 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.42■□□□□ 0.38
LIME1Q9H400 AFG3L1P-217ENST00000557444 2447 ntBASIC17.42■□□□□ 0.38
LIME1Q9H400 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.42■□□□□ 0.38
LIME1Q9H400 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
LIME1Q9H400 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIME1Q9H400 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
LIME1Q9H400 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.42■□□□□ 0.38
LIME1Q9H400 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
LIME1Q9H400 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LIME1Q9H400 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIME1Q9H400 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIME1Q9H400 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.41■□□□□ 0.38
LIME1Q9H400 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.41■□□□□ 0.38
LIME1Q9H400 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIME1Q9H400 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.41■□□□□ 0.38
LIME1Q9H400 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.41■□□□□ 0.38
LIME1Q9H400 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.41■□□□□ 0.38
LIME1Q9H400 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LIME1Q9H400 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.4■□□□□ 0.38
LIME1Q9H400 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.4■□□□□ 0.38
LIME1Q9H400 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.4■□□□□ 0.38
LIME1Q9H400 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC17.4■□□□□ 0.38
LIME1Q9H400 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
LIME1Q9H400 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 AC087633.2-202ENST00000565166 1439 ntBASIC17.4■□□□□ 0.38
LIME1Q9H400 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.4■□□□□ 0.38
LIME1Q9H400 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 MMP23A-201ENST00000234610 1017 ntBASIC17.4■□□□□ 0.38
LIME1Q9H400 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
LIME1Q9H400 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.4■□□□□ 0.38
LIME1Q9H400 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LIME1Q9H400 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIME1Q9H400 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.4■□□□□ 0.38
LIME1Q9H400 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms