Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 NIFKP9-201ENST00000419265 221 ntBASIC19.37■□□□□ 0.69
LMX1AQ8TE12 KSR1P1-201ENST00000446298 240 ntBASIC19.37■□□□□ 0.69
LMX1AQ8TE12 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 REXO1L10P-201ENST00000615707 1290 ntBASIC19.37■□□□□ 0.69
LMX1AQ8TE12 AC097493.4-201ENST00000641197 219 ntBASIC19.37■□□□□ 0.69
LMX1AQ8TE12 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1AQ8TE12 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 UNC93B2-201ENST00000285383 730 ntBASIC19.36■□□□□ 0.69
LMX1AQ8TE12 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 RBM17P1-201ENST00000453646 1190 ntBASIC19.36■□□□□ 0.69
LMX1AQ8TE12 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1AQ8TE12 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.35■□□□□ 0.69
LMX1AQ8TE12 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.35■□□□□ 0.69
LMX1AQ8TE12 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.35■□□□□ 0.69
LMX1AQ8TE12 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.35■□□□□ 0.69
LMX1AQ8TE12 AP000525.1-201ENST00000608286 694 ntBASIC19.35■□□□□ 0.69
LMX1AQ8TE12 AC012306.2-201ENST00000609350 630 ntBASIC19.35■□□□□ 0.69
LMX1AQ8TE12 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1AQ8TE12 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1AQ8TE12 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1AQ8TE12 AC116351.2-201ENST00000606540 1585 ntBASIC19.35■□□□□ 0.69
LMX1AQ8TE12 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.35■□□□□ 0.69
LMX1AQ8TE12 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1AQ8TE12 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 KRT16P1-201ENST00000399124 1418 ntBASIC19.34■□□□□ 0.69
LMX1AQ8TE12 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 AC018553.1-201ENST00000616682 1458 ntBASIC19.34■□□□□ 0.69
LMX1AQ8TE12 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.34■□□□□ 0.69
LMX1AQ8TE12 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.33■□□□□ 0.69
LMX1AQ8TE12 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
LMX1AQ8TE12 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LMX1AQ8TE12 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LMX1AQ8TE12 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LMX1AQ8TE12 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.33■□□□□ 0.69
LMX1AQ8TE12 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LMX1AQ8TE12 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1AQ8TE12 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1AQ8TE12 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.33■□□□□ 0.68
LMX1AQ8TE12 MIR1238-201ENST00000408483 83 ntBASIC19.33■□□□□ 0.68
LMX1AQ8TE12 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1AQ8TE12 AC010331.1-201ENST00000611423 582 ntBASIC19.33■□□□□ 0.68
LMX1AQ8TE12 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms