Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 AC139530.3-201ENST00000620344 690 ntBASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SMC1BQ8NDV3 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SMC1BQ8NDV3 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SMC1BQ8NDV3 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC23.64■■□□□ 1.38
SMC1BQ8NDV3 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SMC1BQ8NDV3 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SMC1BQ8NDV3 ETFA-216ENST00000560726 942 ntTSL 3 BASIC23.64■■□□□ 1.37
SMC1BQ8NDV3 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC23.64■■□□□ 1.37
SMC1BQ8NDV3 GXYLT1P4-201ENST00000613576 1192 ntBASIC23.64■■□□□ 1.37
SMC1BQ8NDV3 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC23.64■■□□□ 1.37
SMC1BQ8NDV3 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SMC1BQ8NDV3 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 AC083849.1-201ENST00000615227 514 ntBASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 AC011298.2-201ENST00000617989 482 ntBASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SMC1BQ8NDV3 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
SMC1BQ8NDV3 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SMC1BQ8NDV3 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
SMC1BQ8NDV3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.62■■□□□ 1.37
SMC1BQ8NDV3 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SMC1BQ8NDV3 AC112907.2-201ENST00000448639 330 ntBASIC23.62■■□□□ 1.37
SMC1BQ8NDV3 TSPY17P-201ENST00000450329 467 ntBASIC23.62■■□□□ 1.37
SMC1BQ8NDV3 AC009078.2-202ENST00000463353 338 ntBASIC23.62■■□□□ 1.37
SMC1BQ8NDV3 UNC93B7-201ENST00000509439 705 ntBASIC23.62■■□□□ 1.37
SMC1BQ8NDV3 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SMC1BQ8NDV3 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
SMC1BQ8NDV3 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 AC012676.1-201ENST00000574705 1949 ntBASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 SNX5-210ENST00000481323 562 ntTSL 3 BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 RCC2P6-201ENST00000526625 1557 ntBASIC23.61■■□□□ 1.37
SMC1BQ8NDV3 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 AC133561.1-201ENST00000568600 2415 ntBASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 HLA-G-202ENST00000376815 851 ntBASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 HLA-G-203ENST00000376818 1127 ntBASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 AC092329.2-201ENST00000598402 547 ntBASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SMC1BQ8NDV3 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 LY6E-213ENST00000522528 606 ntTSL 3 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 AL023803.3-201ENST00000615559 522 ntBASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 DFFB-212ENST00000625756 649 ntTSL 5 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.59■■□□□ 1.37
SMC1BQ8NDV3 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms