Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 KRT16P6-202ENST00000425692 1426 ntBASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 TCF3P1-201ENST00000423021 1937 ntBASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 AC083880.1-201ENST00000608266 535 ntBASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM40Q6P9F5 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 HLA-B-256ENST00000639848 1089 ntBASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
TRIM40Q6P9F5 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.02■□□□□ 0.64
TRIM40Q6P9F5 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM40Q6P9F5 AC092368.3-202ENST00000574180 1591 ntBASIC19.02■□□□□ 0.64
TRIM40Q6P9F5 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM40Q6P9F5 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.02■□□□□ 0.64
TRIM40Q6P9F5 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM40Q6P9F5 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM40Q6P9F5 AC060766.5-201ENST00000590539 871 ntBASIC19.02■□□□□ 0.64
TRIM40Q6P9F5 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
TRIM40Q6P9F5 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
TRIM40Q6P9F5 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
TRIM40Q6P9F5 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TRIM40Q6P9F5 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 AC005829.2-201ENST00000571422 1056 ntBASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
TRIM40Q6P9F5 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
TRIM40Q6P9F5 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19■□□□□ 0.63
TRIM40Q6P9F5 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
TRIM40Q6P9F5 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
TRIM40Q6P9F5 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms