Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 AC008622.2-201ENST00000617006 1229 ntBASIC21.18■□□□□ 0.98
CHD9Q3L8U1 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.17■□□□□ 0.98
CHD9Q3L8U1 AL359075.1-203ENST00000462729 1002 ntBASIC21.17■□□□□ 0.98
CHD9Q3L8U1 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 AC004980.1-204ENST00000429707 299 ntBASIC21.17■□□□□ 0.98
CHD9Q3L8U1 AC007663.1-201ENST00000438948 1240 ntBASIC21.17■□□□□ 0.98
CHD9Q3L8U1 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 AC008040.2-201ENST00000461049 708 ntBASIC21.17■□□□□ 0.98
CHD9Q3L8U1 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.17■□□□□ 0.98
CHD9Q3L8U1 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 TSPY21P-201ENST00000433481 731 ntBASIC21.16■□□□□ 0.98
CHD9Q3L8U1 TSPY23P-201ENST00000440136 739 ntBASIC21.16■□□□□ 0.98
CHD9Q3L8U1 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CHD9Q3L8U1 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 KRT8P10-201ENST00000450021 1447 ntBASIC21.15■□□□□ 0.98
CHD9Q3L8U1 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.15■□□□□ 0.98
CHD9Q3L8U1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHD9Q3L8U1 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 AL671277.2-201ENST00000458060 996 ntBASIC21.14■□□□□ 0.97
CHD9Q3L8U1 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 GPALPP1-207ENST00000611650 899 ntBASIC21.14■□□□□ 0.97
CHD9Q3L8U1 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.14■□□□□ 0.97
CHD9Q3L8U1 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms