Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMK1P53667 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMK1P53667 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMK1P53667 AK4P3-201ENST00000418260 669 ntBASIC19.67■□□□□ 0.74
LIMK1P53667 KRT18P48-201ENST00000434763 852 ntBASIC19.67■□□□□ 0.74
LIMK1P53667 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
LIMK1P53667 EGLN1P1-201ENST00000531623 762 ntBASIC19.67■□□□□ 0.74
LIMK1P53667 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMK1P53667 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMK1P53667 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.67■□□□□ 0.74
LIMK1P53667 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMK1P53667 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMK1P53667 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMK1P53667 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMK1P53667 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMK1P53667 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMK1P53667 KRT16P1-201ENST00000399124 1418 ntBASIC19.67■□□□□ 0.74
LIMK1P53667 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMK1P53667 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMK1P53667 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LIMK1P53667 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
LIMK1P53667 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMK1P53667 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMK1P53667 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMK1P53667 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.66■□□□□ 0.74
LIMK1P53667 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.66■□□□□ 0.74
LIMK1P53667 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.66■□□□□ 0.74
LIMK1P53667 CR392000.1-201ENST00000624770 1228 ntBASIC19.66■□□□□ 0.74
LIMK1P53667 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
LIMK1P53667 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMK1P53667 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LIMK1P53667 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMK1P53667 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMK1P53667 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.65■□□□□ 0.74
LIMK1P53667 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
LIMK1P53667 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
LIMK1P53667 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMK1P53667 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.65■□□□□ 0.74
LIMK1P53667 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMK1P53667 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMK1P53667 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMK1P53667 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIMK1P53667 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.65■□□□□ 0.74
LIMK1P53667 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.65■□□□□ 0.74
LIMK1P53667 MYC-208ENST00000641036 567 ntBASIC19.65■□□□□ 0.74
LIMK1P53667 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
LIMK1P53667 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMK1P53667 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMK1P53667 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMK1P53667 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMK1P53667 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMK1P53667 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMK1P53667 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMK1P53667 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.64■□□□□ 0.74
LIMK1P53667 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMK1P53667 TSPY14P-201ENST00000303979 915 ntBASIC19.64■□□□□ 0.73
LIMK1P53667 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMK1P53667 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMK1P53667 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
LIMK1P53667 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMK1P53667 AC009947.2-201ENST00000444014 672 ntBASIC19.64■□□□□ 0.73
LIMK1P53667 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMK1P53667 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMK1P53667 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.64■□□□□ 0.73
LIMK1P53667 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMK1P53667 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMK1P53667 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LIMK1P53667 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMK1P53667 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMK1P53667 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMK1P53667 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
LIMK1P53667 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.63■□□□□ 0.73
LIMK1P53667 FAM8A6P-201ENST00000407496 1135 ntBASIC19.63■□□□□ 0.73
LIMK1P53667 CRYGFP-201ENST00000418459 633 ntBASIC19.63■□□□□ 0.73
LIMK1P53667 AC026396.1-201ENST00000419388 421 ntBASIC19.63■□□□□ 0.73
LIMK1P53667 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.63■□□□□ 0.73
LIMK1P53667 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMK1P53667 AP005242.2-201ENST00000580065 1175 ntBASIC19.63■□□□□ 0.73
LIMK1P53667 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.63■□□□□ 0.73
LIMK1P53667 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
LIMK1P53667 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
LIMK1P53667 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMK1P53667 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LIMK1P53667 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms