Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SCN4AP35499 TUBB8P6-201ENST00000436895 1288 ntBASIC23.67■■□□□ 1.38
SCN4AP35499 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC23.67■■□□□ 1.38
SCN4AP35499 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC23.67■■□□□ 1.38
SCN4AP35499 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SCN4AP35499 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SCN4AP35499 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.67■■□□□ 1.38
SCN4AP35499 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SCN4AP35499 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SCN4AP35499 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC23.66■■□□□ 1.38
SCN4AP35499 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SCN4AP35499 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
SCN4AP35499 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SCN4AP35499 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SCN4AP35499 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC23.66■■□□□ 1.38
SCN4AP35499 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC23.66■■□□□ 1.38
SCN4AP35499 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC23.66■■□□□ 1.38
SCN4AP35499 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SCN4AP35499 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SCN4AP35499 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC23.66■■□□□ 1.38
SCN4AP35499 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SCN4AP35499 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SCN4AP35499 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.66■■□□□ 1.38
SCN4AP35499 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC23.66■■□□□ 1.38
SCN4AP35499 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
SCN4AP35499 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SCN4AP35499 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SCN4AP35499 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC23.66■■□□□ 1.38
SCN4AP35499 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC23.66■■□□□ 1.38
SCN4AP35499 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SCN4AP35499 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC23.66■■□□□ 1.38
SCN4AP35499 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC23.66■■□□□ 1.38
SCN4AP35499 AL136038.3-201ENST00000561909 1096 ntBASIC23.66■■□□□ 1.38
SCN4AP35499 AL023803.3-201ENST00000615559 522 ntBASIC23.66■■□□□ 1.38
SCN4AP35499 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC23.66■■□□□ 1.38
SCN4AP35499 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SCN4AP35499 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SCN4AP35499 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
SCN4AP35499 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC23.65■■□□□ 1.38
SCN4AP35499 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SCN4AP35499 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SCN4AP35499 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SCN4AP35499 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SCN4AP35499 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC23.65■■□□□ 1.38
SCN4AP35499 AL031432.5-201ENST00000641059 760 ntBASIC23.65■■□□□ 1.38
SCN4AP35499 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC23.65■■□□□ 1.38
SCN4AP35499 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.65■■□□□ 1.38
SCN4AP35499 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
SCN4AP35499 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
SCN4AP35499 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
SCN4AP35499 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
SCN4AP35499 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC23.64■■□□□ 1.38
SCN4AP35499 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SCN4AP35499 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC23.64■■□□□ 1.38
SCN4AP35499 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
SCN4AP35499 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC23.64■■□□□ 1.38
SCN4AP35499 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC23.64■■□□□ 1.38
SCN4AP35499 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC23.64■■□□□ 1.38
SCN4AP35499 PRR29-207ENST00000580752 458 ntTSL 3 BASIC23.64■■□□□ 1.38
SCN4AP35499 RN7SL510P-201ENST00000581311 263 ntBASIC23.64■■□□□ 1.38
SCN4AP35499 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.64■■□□□ 1.38
SCN4AP35499 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC23.64■■□□□ 1.38
SCN4AP35499 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.64■■□□□ 1.38
SCN4AP35499 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC23.64■■□□□ 1.37
SCN4AP35499 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SCN4AP35499 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC23.64■■□□□ 1.37
SCN4AP35499 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC23.64■■□□□ 1.37
SCN4AP35499 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
SCN4AP35499 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC23.63■■□□□ 1.37
SCN4AP35499 FXN-203ENST00000396366 922 ntTSL 2 BASIC23.63■■□□□ 1.37
SCN4AP35499 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC23.63■■□□□ 1.37
SCN4AP35499 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
SCN4AP35499 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC23.63■■□□□ 1.37
SCN4AP35499 ETFA-216ENST00000560726 942 ntTSL 3 BASIC23.63■■□□□ 1.37
SCN4AP35499 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC23.63■■□□□ 1.37
SCN4AP35499 NPAP1P7-201ENST00000613027 823 ntBASIC23.63■■□□□ 1.37
SCN4AP35499 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.63■■□□□ 1.37
SCN4AP35499 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.63■■□□□ 1.37
SCN4AP35499 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
SCN4AP35499 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC23.63■■□□□ 1.37
SCN4AP35499 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.63■■□□□ 1.37
SCN4AP35499 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SCN4AP35499 LY6E-213ENST00000522528 606 ntTSL 3 BASIC23.63■■□□□ 1.37
SCN4AP35499 AC111152.3-201ENST00000569699 673 ntBASIC23.63■■□□□ 1.37
SCN4AP35499 KLK8-205ENST00000593490 267 ntTSL 3 BASIC23.63■■□□□ 1.37
SCN4AP35499 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC23.63■■□□□ 1.37
SCN4AP35499 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SCN4AP35499 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SCN4AP35499 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SCN4AP35499 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SCN4AP35499 ME2-206ENST00000638410 2289 ntTSL 5 BASIC23.63■■□□□ 1.37
SCN4AP35499 ME2-210ENST00000639255 2262 ntTSL 5 BASIC23.63■■□□□ 1.37
SCN4AP35499 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SCN4AP35499 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SCN4AP35499 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SCN4AP35499 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SCN4AP35499 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SCN4AP35499 STK25-204ENST00000405585 1643 ntTSL 2 BASIC23.62■■□□□ 1.37
SCN4AP35499 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SCN4AP35499 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms