Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RXRBP28702 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
RXRBP28702 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RXRBP28702 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RXRBP28702 FAM220CP-201ENST00000395253 831 ntBASIC26.25■■□□□ 1.79
RXRBP28702 HMGN1P19-201ENST00000436976 333 ntBASIC26.25■■□□□ 1.79
RXRBP28702 TSSC2-201ENST00000450217 709 ntBASIC26.25■■□□□ 1.79
RXRBP28702 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
RXRBP28702 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
RXRBP28702 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RXRBP28702 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RXRBP28702 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RXRBP28702 CALM3-202ENST00000391918 702 ntTSL 2 BASIC26.24■■□□□ 1.79
RXRBP28702 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC26.24■■□□□ 1.79
RXRBP28702 SPDYE13P-201ENST00000445314 798 ntBASIC26.24■■□□□ 1.79
RXRBP28702 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC26.24■■□□□ 1.79
RXRBP28702 AL662844.1-201ENST00000546340 181 ntBASIC26.24■■□□□ 1.79
RXRBP28702 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC26.24■■□□□ 1.79
RXRBP28702 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC26.24■■□□□ 1.79
RXRBP28702 AC120114.3-201ENST00000611923 658 ntBASIC26.24■■□□□ 1.79
RXRBP28702 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
RXRBP28702 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC26.24■■□□□ 1.79
RXRBP28702 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RXRBP28702 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RXRBP28702 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
RXRBP28702 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC26.23■■□□□ 1.79
RXRBP28702 PMS2P1-201ENST00000431037 1228 ntBASIC26.23■■□□□ 1.79
RXRBP28702 AP002469.2-201ENST00000531724 424 ntBASIC26.23■■□□□ 1.79
RXRBP28702 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC26.23■■□□□ 1.79
RXRBP28702 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
RXRBP28702 BX640515.1-201ENST00000617215 977 ntBASIC26.23■■□□□ 1.79
RXRBP28702 HOTTIP_1.1-201ENST00000620415 57 ntBASIC26.23■■□□□ 1.79
RXRBP28702 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC26.23■■□□□ 1.79
RXRBP28702 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
RXRBP28702 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RXRBP28702 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
RXRBP28702 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
RXRBP28702 KRT18P1-202ENST00000452408 1331 ntBASIC26.22■■□□□ 1.79
RXRBP28702 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RXRBP28702 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
RXRBP28702 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RXRBP28702 AP000523.1-201ENST00000398242 1049 ntBASIC26.22■■□□□ 1.79
RXRBP28702 TSPY19P-201ENST00000418461 509 ntBASIC26.22■■□□□ 1.79
RXRBP28702 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC26.22■■□□□ 1.79
RXRBP28702 TSPY18P-201ENST00000441642 509 ntBASIC26.22■■□□□ 1.79
RXRBP28702 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC26.22■■□□□ 1.79
RXRBP28702 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
RXRBP28702 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC26.22■■□□□ 1.79
RXRBP28702 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC26.22■■□□□ 1.79
RXRBP28702 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RXRBP28702 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
RXRBP28702 KRT8P8-201ENST00000434750 1448 ntBASIC26.22■■□□□ 1.79
RXRBP28702 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RXRBP28702 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
RXRBP28702 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC26.21■■□□□ 1.79
RXRBP28702 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RXRBP28702 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
RXRBP28702 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC26.21■■□□□ 1.79
RXRBP28702 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RXRBP28702 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC26.21■■□□□ 1.79
RXRBP28702 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC26.21■■□□□ 1.79
RXRBP28702 FGF14-AS2-201ENST00000606448 1074 ntBASIC26.21■■□□□ 1.79
RXRBP28702 AL732292.2-201ENST00000609649 430 ntBASIC26.21■■□□□ 1.79
RXRBP28702 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
RXRBP28702 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC26.21■■□□□ 1.79
RXRBP28702 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
RXRBP28702 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.2■■□□□ 1.79
RXRBP28702 AC022898.2-201ENST00000616822 1312 ntBASIC26.2■■□□□ 1.79
RXRBP28702 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC26.2■■□□□ 1.79
RXRBP28702 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC26.2■■□□□ 1.79
RXRBP28702 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
RXRBP28702 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC26.2■■□□□ 1.78
RXRBP28702 Telomerase-vert.1-201ENST00000363312 438 ntBASIC26.2■■□□□ 1.78
RXRBP28702 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC26.2■■□□□ 1.78
RXRBP28702 MIR1233-2-201ENST00000408138 82 ntBASIC26.2■■□□□ 1.78
RXRBP28702 MIR1233-1-201ENST00000408722 82 ntBASIC26.2■■□□□ 1.78
RXRBP28702 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.78
RXRBP28702 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
RXRBP28702 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
RXRBP28702 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
RXRBP28702 STK25-204ENST00000405585 1643 ntTSL 2 BASIC26.19■■□□□ 1.78
RXRBP28702 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
RXRBP28702 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RXRBP28702 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RXRBP28702 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
RXRBP28702 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
RXRBP28702 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RXRBP28702 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC26.18■■□□□ 1.78
RXRBP28702 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RXRBP28702 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
RXRBP28702 AL645929.1-201ENST00000420084 975 ntBASIC26.18■■□□□ 1.78
RXRBP28702 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RXRBP28702 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
RXRBP28702 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RXRBP28702 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RXRBP28702 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
RXRBP28702 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC26.18■■□□□ 1.78
RXRBP28702 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RXRBP28702 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
RXRBP28702 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms