Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.17■□□□□ 0.5
MSX1P28360 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.17■□□□□ 0.5
MSX1P28360 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
MSX1P28360 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.17■□□□□ 0.5
MSX1P28360 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.17■□□□□ 0.5
MSX1P28360 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
MSX1P28360 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
MSX1P28360 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX1P28360 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX1P28360 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX1P28360 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
MSX1P28360 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX1P28360 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSX1P28360 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.16■□□□□ 0.5
MSX1P28360 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSX1P28360 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
MSX1P28360 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.16■□□□□ 0.5
MSX1P28360 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
MSX1P28360 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.16■□□□□ 0.5
MSX1P28360 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.16■□□□□ 0.5
MSX1P28360 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX1P28360 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX1P28360 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX1P28360 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX1P28360 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.16■□□□□ 0.5
MSX1P28360 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.16■□□□□ 0.5
MSX1P28360 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSX1P28360 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
MSX1P28360 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.15■□□□□ 0.5
MSX1P28360 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.15■□□□□ 0.5
MSX1P28360 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.15■□□□□ 0.5
MSX1P28360 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
MSX1P28360 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.15■□□□□ 0.5
MSX1P28360 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.15■□□□□ 0.5
MSX1P28360 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.15■□□□□ 0.5
MSX1P28360 AC006557.6-201ENST00000623071 864 ntBASIC18.15■□□□□ 0.5
MSX1P28360 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.15■□□□□ 0.5
MSX1P28360 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
MSX1P28360 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
MSX1P28360 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
MSX1P28360 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.15■□□□□ 0.5
MSX1P28360 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX1P28360 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.14■□□□□ 0.5
MSX1P28360 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
MSX1P28360 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
MSX1P28360 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
MSX1P28360 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.14■□□□□ 0.49
MSX1P28360 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.14■□□□□ 0.49
MSX1P28360 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
MSX1P28360 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.14■□□□□ 0.49
MSX1P28360 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.14■□□□□ 0.49
MSX1P28360 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.14■□□□□ 0.49
MSX1P28360 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.14■□□□□ 0.49
MSX1P28360 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.14■□□□□ 0.49
MSX1P28360 SOX15-203ENST00000570788 1093 ntBASIC18.14■□□□□ 0.49
MSX1P28360 MIR4497-201ENST00000583208 89 ntBASIC18.14■□□□□ 0.49
MSX1P28360 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.14■□□□□ 0.49
MSX1P28360 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.14■□□□□ 0.49
MSX1P28360 AC120498.8-201ENST00000614275 531 ntBASIC18.14■□□□□ 0.49
MSX1P28360 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.14■□□□□ 0.49
MSX1P28360 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.14■□□□□ 0.49
MSX1P28360 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
MSX1P28360 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.14■□□□□ 0.49
MSX1P28360 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSX1P28360 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.14■□□□□ 0.49
MSX1P28360 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms