Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A2P12110 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A2P12110 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL6A2P12110 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A2P12110 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A2P12110 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A2P12110 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A2P12110 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A2P12110 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.59■□□□□ 0.73
COL6A2P12110 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.59■□□□□ 0.73
COL6A2P12110 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A2P12110 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL6A2P12110 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.59■□□□□ 0.73
COL6A2P12110 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.59■□□□□ 0.73
COL6A2P12110 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.59■□□□□ 0.73
COL6A2P12110 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
COL6A2P12110 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A2P12110 AC016769.1-201ENST00000409132 1010 ntBASIC19.59■□□□□ 0.73
COL6A2P12110 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.59■□□□□ 0.73
COL6A2P12110 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.59■□□□□ 0.73
COL6A2P12110 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A2P12110 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.59■□□□□ 0.73
COL6A2P12110 AC087623.3-201ENST00000607047 1098 ntBASIC19.59■□□□□ 0.73
COL6A2P12110 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.59■□□□□ 0.73
COL6A2P12110 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.59■□□□□ 0.73
COL6A2P12110 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A2P12110 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.59■□□□□ 0.73
COL6A2P12110 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A2P12110 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.59■□□□□ 0.73
COL6A2P12110 AC098818.2-201ENST00000564925 2320 ntBASIC19.59■□□□□ 0.73
COL6A2P12110 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A2P12110 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A2P12110 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A2P12110 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A2P12110 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A2P12110 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.58■□□□□ 0.73
COL6A2P12110 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A2P12110 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
COL6A2P12110 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
COL6A2P12110 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.58■□□□□ 0.73
COL6A2P12110 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.58■□□□□ 0.72
COL6A2P12110 KRT18P5-201ENST00000436075 1291 ntBASIC19.58■□□□□ 0.72
COL6A2P12110 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.58■□□□□ 0.72
COL6A2P12110 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.58■□□□□ 0.72
COL6A2P12110 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.58■□□□□ 0.72
COL6A2P12110 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.58■□□□□ 0.72
COL6A2P12110 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.58■□□□□ 0.72
COL6A2P12110 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A2P12110 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.58■□□□□ 0.72
COL6A2P12110 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A2P12110 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A2P12110 PHGDH-210ENST00000641115 1638 ntBASIC19.58■□□□□ 0.72
COL6A2P12110 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.58■□□□□ 0.72
COL6A2P12110 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
COL6A2P12110 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
COL6A2P12110 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A2P12110 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A2P12110 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A2P12110 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
COL6A2P12110 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A2P12110 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A2P12110 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 AC006015.1-201ENST00000429970 570 ntBASIC19.57■□□□□ 0.72
COL6A2P12110 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.57■□□□□ 0.72
COL6A2P12110 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.57■□□□□ 0.72
COL6A2P12110 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.57■□□□□ 0.72
COL6A2P12110 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.57■□□□□ 0.72
COL6A2P12110 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.57■□□□□ 0.72
COL6A2P12110 AC008694.1-202ENST00000636953 945 ntBASIC19.57■□□□□ 0.72
COL6A2P12110 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL6A2P12110 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
COL6A2P12110 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A2P12110 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A2P12110 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A2P12110 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A2P12110 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A2P12110 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A2P12110 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A2P12110 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A2P12110 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A2P12110 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A2P12110 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.56■□□□□ 0.72
COL6A2P12110 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A2P12110 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.56■□□□□ 0.72
COL6A2P12110 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
COL6A2P12110 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A2P12110 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms