Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
MSH4O15457 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC22.35■■□□□ 1.17
MSH4O15457 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH4O15457 AC112907.3-201ENST00000577781 2400 ntBASIC22.35■■□□□ 1.17
MSH4O15457 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
MSH4O15457 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC22.35■■□□□ 1.17
MSH4O15457 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH4O15457 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
MSH4O15457 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC22.35■■□□□ 1.17
MSH4O15457 F2R-202ENST00000505600 442 ntTSL 2 BASIC22.35■■□□□ 1.17
MSH4O15457 RHOD-202ENST00000532559 538 ntTSL 3 BASIC22.35■■□□□ 1.17
MSH4O15457 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
MSH4O15457 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
MSH4O15457 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC22.35■■□□□ 1.17
MSH4O15457 FAM197Y4-202ENST00000622692 608 ntBASIC22.35■■□□□ 1.17
MSH4O15457 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH4O15457 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH4O15457 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH4O15457 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
MSH4O15457 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.34■■□□□ 1.17
MSH4O15457 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC22.34■■□□□ 1.17
MSH4O15457 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH4O15457 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
MSH4O15457 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC22.34■■□□□ 1.17
MSH4O15457 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC22.34■■□□□ 1.17
MSH4O15457 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC22.34■■□□□ 1.17
MSH4O15457 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC22.34■■□□□ 1.17
MSH4O15457 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC22.34■■□□□ 1.17
MSH4O15457 AC066615.1-201ENST00000640911 628 ntBASIC22.34■■□□□ 1.17
MSH4O15457 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH4O15457 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH4O15457 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC22.34■■□□□ 1.17
MSH4O15457 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
MSH4O15457 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC22.33■■□□□ 1.17
MSH4O15457 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC22.33■■□□□ 1.17
MSH4O15457 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
MSH4O15457 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
MSH4O15457 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
MSH4O15457 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
MSH4O15457 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC22.33■■□□□ 1.17
MSH4O15457 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC22.33■■□□□ 1.17
MSH4O15457 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
MSH4O15457 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
MSH4O15457 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
MSH4O15457 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC22.33■■□□□ 1.17
MSH4O15457 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
MSH4O15457 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC22.33■■□□□ 1.17
MSH4O15457 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC22.33■■□□□ 1.17
MSH4O15457 AC110285.5-201ENST00000611501 352 ntBASIC22.33■■□□□ 1.17
MSH4O15457 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
MSH4O15457 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
MSH4O15457 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
MSH4O15457 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
MSH4O15457 NBPF21P-201ENST00000425093 1451 ntBASIC22.33■■□□□ 1.16
MSH4O15457 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC22.33■■□□□ 1.16
MSH4O15457 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH4O15457 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH4O15457 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH4O15457 TCF3P1-201ENST00000423021 1937 ntBASIC22.32■■□□□ 1.16
MSH4O15457 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH4O15457 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC22.32■■□□□ 1.16
MSH4O15457 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH4O15457 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC22.32■■□□□ 1.16
MSH4O15457 SPIB-206ENST00000596074 847 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH4O15457 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH4O15457 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH4O15457 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
MSH4O15457 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
MSH4O15457 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH4O15457 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
MSH4O15457 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH4O15457 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
MSH4O15457 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH4O15457 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH4O15457 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH4O15457 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC22.31■■□□□ 1.16
MSH4O15457 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH4O15457 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC22.31■■□□□ 1.16
MSH4O15457 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
MSH4O15457 UBE2SP1-201ENST00000450587 669 ntBASIC22.31■■□□□ 1.16
MSH4O15457 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH4O15457 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC22.31■■□□□ 1.16
MSH4O15457 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
MSH4O15457 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH4O15457 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH4O15457 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC22.31■■□□□ 1.16
MSH4O15457 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
MSH4O15457 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH4O15457 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC22.31■■□□□ 1.16
MSH4O15457 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH4O15457 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH4O15457 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC22.3■■□□□ 1.16
MSH4O15457 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
MSH4O15457 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC22.3■■□□□ 1.16
MSH4O15457 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH4O15457 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH4O15457 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC22.3■■□□□ 1.16
MSH4O15457 DET1-205ENST00000558413 583 ntTSL 4 BASIC22.3■■□□□ 1.16
MSH4O15457 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC22.3■■□□□ 1.16
MSH4O15457 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms