Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
NEK3P51956 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
NEK3P51956 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
NEK3P51956 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
NEK3P51956 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC7.09□□□□□ -1.27
NEK3P51956 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
NEK3P51956 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC7.09□□□□□ -1.27
NEK3P51956 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC7.09□□□□□ -1.27
NEK3P51956 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC7.09□□□□□ -1.27
NEK3P51956 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
NEK3P51956 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
NEK3P51956 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
NEK3P51956 CASC19-238ENST00000641523 1558 ntBASIC7.09□□□□□ -1.27
NEK3P51956 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.09□□□□□ -1.27
NEK3P51956 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC7.09□□□□□ -1.27
NEK3P51956 OR1F12-201ENST00000402365 945 ntBASIC7.09□□□□□ -1.27
NEK3P51956 CDY17P-201ENST00000414121 1282 ntBASIC7.09□□□□□ -1.27
NEK3P51956 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC7.09□□□□□ -1.27
NEK3P51956 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC7.09□□□□□ -1.27
NEK3P51956 CDY8P-201ENST00000428380 1279 ntBASIC7.09□□□□□ -1.27
NEK3P51956 E2F6P1-201ENST00000428850 745 ntBASIC7.09□□□□□ -1.27
NEK3P51956 MRPS33P4-201ENST00000434892 317 ntBASIC7.09□□□□□ -1.27
NEK3P51956 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
NEK3P51956 CDY20P-201ENST00000447528 1279 ntBASIC7.09□□□□□ -1.27
NEK3P51956 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
NEK3P51956 TFP1-201ENST00000460564 572 ntTSL 4 BASIC7.09□□□□□ -1.27
NEK3P51956 RPL23AP8-201ENST00000479812 475 ntBASIC7.09□□□□□ -1.27
NEK3P51956 TFP1-203ENST00000490470 561 ntTSL 4 BASIC7.09□□□□□ -1.27
NEK3P51956 AK4P6-201ENST00000505168 528 ntBASIC7.09□□□□□ -1.27
NEK3P51956 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
NEK3P51956 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC7.09□□□□□ -1.27
NEK3P51956 OR9L1P-201ENST00000529493 933 ntBASIC7.09□□□□□ -1.27
NEK3P51956 OR4A21P-201ENST00000532759 944 ntBASIC7.09□□□□□ -1.27
NEK3P51956 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC7.09□□□□□ -1.27
NEK3P51956 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC7.09□□□□□ -1.27
NEK3P51956 AC069240.2-201ENST00000550242 609 ntBASIC7.09□□□□□ -1.27
NEK3P51956 AC089984.3-201ENST00000552838 363 ntBASIC7.09□□□□□ -1.27
NEK3P51956 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC7.09□□□□□ -1.27
NEK3P51956 AC025040.1-201ENST00000560375 1284 ntTSL 2 BASIC7.09□□□□□ -1.27
NEK3P51956 MIR4428-201ENST00000584884 73 ntBASIC7.09□□□□□ -1.27
NEK3P51956 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
NEK3P51956 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC7.09□□□□□ -1.27
NEK3P51956 AL356094.1-201ENST00000624663 1212 ntBASIC7.09□□□□□ -1.27
NEK3P51956 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC7.09□□□□□ -1.27
NEK3P51956 MTCO1P28-201ENST00000574177 1528 ntBASIC7.09□□□□□ -1.27
NEK3P51956 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
NEK3P51956 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
NEK3P51956 COG2-209ENST00000534989 2963 ntTSL 2 BASIC7.09□□□□□ -1.27
NEK3P51956 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
NEK3P51956 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
NEK3P51956 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC7.09□□□□□ -1.28
NEK3P51956 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC7.09□□□□□ -1.28
NEK3P51956 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
NEK3P51956 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.28
NEK3P51956 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
NEK3P51956 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC7.08□□□□□ -1.28
NEK3P51956 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
NEK3P51956 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
NEK3P51956 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC7.08□□□□□ -1.28
NEK3P51956 AC024341.1-201ENST00000526444 1552 ntBASIC7.08□□□□□ -1.28
NEK3P51956 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC7.08□□□□□ -1.28
NEK3P51956 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
NEK3P51956 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
NEK3P51956 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
NEK3P51956 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC7.08□□□□□ -1.28
NEK3P51956 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
NEK3P51956 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC7.08□□□□□ -1.28
NEK3P51956 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
NEK3P51956 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
NEK3P51956 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
NEK3P51956 RNU6-152P-201ENST00000384037 107 ntBASIC7.08□□□□□ -1.28
NEK3P51956 RPL9P21-201ENST00000392269 505 ntBASIC7.08□□□□□ -1.28
NEK3P51956 VN1R66P-201ENST00000412929 916 ntBASIC7.08□□□□□ -1.28
NEK3P51956 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC7.08□□□□□ -1.28
NEK3P51956 EIF4A1P2-201ENST00000422633 1220 ntBASIC7.08□□□□□ -1.28
NEK3P51956 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC7.08□□□□□ -1.28
NEK3P51956 ZFAND6P1-201ENST00000434138 605 ntBASIC7.08□□□□□ -1.28
NEK3P51956 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC7.08□□□□□ -1.28
NEK3P51956 SDHCP3-201ENST00000445371 506 ntBASIC7.08□□□□□ -1.28
NEK3P51956 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC7.08□□□□□ -1.28
NEK3P51956 RPS15AP29-201ENST00000445539 400 ntBASIC7.08□□□□□ -1.28
NEK3P51956 RN7SL267P-201ENST00000485107 261 ntBASIC7.08□□□□□ -1.28
NEK3P51956 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC7.08□□□□□ -1.28
NEK3P51956 RNU6-491P-201ENST00000516099 110 ntBASIC7.08□□□□□ -1.28
NEK3P51956 RN7SKP11-201ENST00000517018 287 ntBASIC7.08□□□□□ -1.28
NEK3P51956 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC7.08□□□□□ -1.28
NEK3P51956 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC7.08□□□□□ -1.28
NEK3P51956 AC021820.1-201ENST00000525564 808 ntBASIC7.08□□□□□ -1.28
NEK3P51956 EEF1A1P17-201ENST00000547505 1275 ntBASIC7.08□□□□□ -1.28
NEK3P51956 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
NEK3P51956 SNORA70D-201ENST00000578836 135 ntBASIC7.08□□□□□ -1.28
NEK3P51956 MIR5095-201ENST00000578844 88 ntBASIC7.08□□□□□ -1.28
NEK3P51956 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC7.08□□□□□ -1.28
NEK3P51956 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC7.08□□□□□ -1.28
NEK3P51956 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC7.08□□□□□ -1.28
NEK3P51956 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC7.08□□□□□ -1.28
NEK3P51956 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC7.08□□□□□ -1.28
NEK3P51956 AC073111.2-201ENST00000605657 1075 ntBASIC7.08□□□□□ -1.28
NEK3P51956 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC7.08□□□□□ -1.28
NEK3P51956 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms