Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXD4P09016 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXD4P09016 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 RNA5SP474-201ENST00000391234 90 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 FDPSP5-201ENST00000399474 1057 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXD4P09016 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.13□□□□□ -1.43
HOXD4P09016 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXD4P09016 AC128677.1-201ENST00000436016 442 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 AC007383.1-201ENST00000445875 636 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 EEF1B2P3-201ENST00000447718 678 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 AL121578.2-201ENST00000448797 447 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 AKR1D1P1-201ENST00000457236 936 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 RPS3AP49-201ENST00000472161 790 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 AC131233.1-201ENST00000479200 955 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 RN7SL37P-201ENST00000490461 307 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 PFN2-217ENST00000498307 556 ntTSL 4 BASIC6.13□□□□□ -1.43
HOXD4P09016 B4GALNT2P1-201ENST00000508857 307 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 AC010442.1-201ENST00000515583 816 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXD4P09016 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXD4P09016 AC087752.2-201ENST00000521219 281 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXD4P09016 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC6.13□□□□□ -1.43
HOXD4P09016 OR4A41P-201ENST00000533053 928 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXD4P09016 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXD4P09016 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXD4P09016 AC020914.7-201ENST00000594477 545 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC6.13□□□□□ -1.43
HOXD4P09016 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXD4P09016 AL355480.1-201ENST00000629041 99 ntBASIC6.13□□□□□ -1.43
HOXD4P09016 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXD4P09016 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXD4P09016 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXD4P09016 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXD4P09016 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXD4P09016 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.13□□□□□ -1.43
HOXD4P09016 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXD4P09016 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.12□□□□□ -1.43
HOXD4P09016 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXD4P09016 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
HOXD4P09016 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
HOXD4P09016 RN7SKP47-201ENST00000365347 328 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 RGS5-202ENST00000367903 934 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXD4P09016 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXD4P09016 SNORA7A-201ENST00000384765 139 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXD4P09016 AL512329.1-201ENST00000404600 1592 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXD4P09016 UBTFL2-201ENST00000411859 1191 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 CDY7P-201ENST00000429883 1604 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 FANCD2P2-201ENST00000437591 1400 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXD4P09016 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXD4P09016 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 AC118758.1-202ENST00000454719 225 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXD4P09016 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
HOXD4P09016 AC122718.2-201ENST00000505325 591 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXD4P09016 AC073581.1-201ENST00000519036 575 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 IGHVII-60-1-201ENST00000519079 256 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 EEF1B2P2-201ENST00000519625 676 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXD4P09016 AP004607.6-201ENST00000525033 1202 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
HOXD4P09016 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXD4P09016 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC6.12□□□□□ -1.43
HOXD4P09016 MT1CP-201ENST00000567054 174 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
HOXD4P09016 MIR5095-201ENST00000578844 88 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.12□□□□□ -1.43
HOXD4P09016 PCA3_2.1-201ENST00000612507 409 ntBASIC6.12□□□□□ -1.43
HOXD4P09016 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXD4P09016 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
HOXD4P09016 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXD4P09016 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
HOXD4P09016 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms