Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RN7SL656P-201ENST00000579044 281 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 RN7SL270P-201ENST00000579643 281 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 RAB28P4-201ENST00000622233 665 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC025262.3-201ENST00000623666 360 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC111152.1-202ENST00000635848 339 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC010325.3-201ENST00000641084 394 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AL354702.2-202ENST00000641481 890 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AL391262.1-201ENST00000556558 1992 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC104162.1-201ENST00000430831 2382 ntBASIC6.77□□□□□ -1.32
HDDC3Q8N4P3 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC6.77□□□□□ -1.32
HDDC3Q8N4P3 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC6.77□□□□□ -1.32
HDDC3Q8N4P3 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 MTHFD1P1-201ENST00000413059 2764 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC122713.2-201ENST00000624942 3335 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 RN7SKP129-201ENST00000410288 299 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 RN7SKP240-201ENST00000410583 375 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 RN7SL382P-201ENST00000482631 282 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 SCG5-207ENST00000497208 949 ntTSL 5 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC112484.3-201ENST00000505910 329 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC021220.1-201ENST00000507445 630 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AL390198.2-201ENST00000510553 222 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 DPPA3P2-201ENST00000553589 478 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AL445383.1-201ENST00000554689 874 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 MRPS21P9-201ENST00000571150 257 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC005726.4-201ENST00000582858 458 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC091133.5-201ENST00000603088 301 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 MIR6721-201ENST00000617181 87 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AP003789.1-201ENST00000617737 605 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AL035425.4-201ENST00000624509 1063 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC008691.1-209ENST00000642094 814 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC010168.2-201ENST00000562691 5428 ntBASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC6.77□□□□□ -1.33
HDDC3Q8N4P3 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 IFIT1P1-201ENST00000400497 1449 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AC011592.1-201ENST00000624647 3634 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 RNA5SP188-201ENST00000362916 129 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 RNA5SP485-201ENST00000365053 119 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 RNU1-55P-201ENST00000365510 158 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AL663061.1-201ENST00000416625 580 ntBASIC6.76□□□□□ -1.33
HDDC3Q8N4P3 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms