Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL121895.2-201ENST00000619558 447 ntBASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 AC024595.1-201ENST00000623088 387 ntBASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 AC093909.6-201ENST00000624757 775 ntBASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 AC104073.4-201ENST00000632111 598 ntTSL 2 BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 AC017000.1-201ENST00000639380 578 ntTSL 5 BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 AC087203.2-201ENST00000526502 1587 ntBASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 SELENOP-203ENST00000506577 2204 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 PART1-203ENST00000515734 2569 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 ZNF577-201ENST00000301399 3074 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
TRAIPQ9BWF2 ZNF667-202ENST00000504904 4390 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 TTC41P-204ENST00000548897 2998 ntTSL 5 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 MAPK10-296ENST00000641283 2826 ntAPPRIS P2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 MAGEB18-201ENST00000325250 1811 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 LINC00299-201ENST00000430192 1760 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 GTF2H2B-203ENST00000508065 1432 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 PDXDC1-203ENST00000450288 4171 ntTSL 5 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 MTND4P10-201ENST00000446199 1363 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 HMGXB4-201ENST00000216106 4047 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 OR10J3-201ENST00000332217 990 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 CBWD5-205ENST00000377395 1143 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 RNU2-22P-201ENST00000411266 212 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 SNX18P13-201ENST00000412442 529 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 TAF13P2-201ENST00000416876 286 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 ATP1B3-202ENST00000462082 837 ntTSL 3 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 RN7SL55P-201ENST00000464534 297 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 RN7SL58P-201ENST00000473445 294 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 RN7SL861P-201ENST00000473793 285 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 HHLA3-207ENST00000531950 541 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AC012181.2-201ENST00000570210 699 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 FCGR1CP-201ENST00000579737 1127 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 MIR5010-201ENST00000582846 120 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 OR5AH1P-201ENST00000595968 283 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AC107952.2-201ENST00000606048 486 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AC007349.4-201ENST00000608114 532 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 LINC00635-221ENST00000609366 784 ntTSL 5 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 ACACA-232ENST00000614438 569 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AL359745.1-201ENST00000626943 760 ntTSL 5 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 LINC01808-202ENST00000641680 1116 ntBASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 TOPORS-202ENST00000379858 3621 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 FSTL5-203ENST00000427802 2920 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 NPIPB11-201ENST00000524087 3653 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 CKAP2-203ENST00000378037 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 MYRFL-203ENST00000547771 3465 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AC008676.2-202ENST00000509655 1992 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AC027097.2-201ENST00000588925 1976 ntTSL 2 BASIC8.41□□□□□ -1.06
TRAIPQ9BWF2 AC009948.5-201ENST00000624360 4406 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 TCF12-206ENST00000543579 1809 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 AC003973.3-201ENST00000624863 2822 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 ZNF876P-202ENST00000398732 1485 ntBASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 ZNF235-201ENST00000291182 3188 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 ZNF658-206ENST00000621410 4025 ntAPPRIS P1 TSL 2 BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
TRAIPQ9BWF2 MGST3-202ENST00000367884 716 ntAPPRIS P1 TSL 3 BASIC8.4□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms