Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ZIM3-201ENST00000269834 2627 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 RNA5SP512-201ENST00000364550 120 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 MRPS6P2-201ENST00000381143 370 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC004386.1-201ENST00000393214 761 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 PIP5K1P2-201ENST00000437005 1120 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC021146.11-201ENST00000503319 491 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ZNF365-211ENST00000614806 877 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 uc_338.31-201ENST00000615595 186 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 WNK1-220ENST00000574564 1401 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 QRSL1P1-201ENST00000400977 1540 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 NXF2-202ENST00000625106 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC104966.1-201ENST00000467010 1464 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 RPS29P14-201ENST00000431518 171 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ATP1B3-202ENST00000462082 837 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 RPS26P11-201ENST00000463445 348 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 RPS26P6-201ENST00000475156 348 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 RN7SL284P-201ENST00000498823 275 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC026826.3-201ENST00000561747 158 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 LINC00556-201ENST00000569603 412 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 C5orf56-207ENST00000621237 486 ntAPPRIS P5 TSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC026124.2-201ENST00000621847 656 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC241584.2-201ENST00000637142 2090 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 MTND2P12-201ENST00000417560 1252 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AL356309.1-201ENST00000425153 339 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 PRDX1P1-201ENST00000449329 596 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 NUCKS1P1-201ENST00000452067 703 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 RPL12P7-201ENST00000493832 494 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ST13P6-201ENST00000522430 1102 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 RPL3P13-201ENST00000550415 216 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC002090.1-201ENST00000625000 2138 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC092646.2-201ENST00000431242 2095 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 AC018688.1-201ENST00000636528 1754 ntBASIC2.04□□□□□ -2.08
SYNE1Q8NF91 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC2.04□□□□□ -2.08
SYNE1Q8NF91 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 USP8-204ENST00000425032 3559 ntTSL 2 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AC087752.1-201ENST00000391360 558 ntBASIC2.03□□□□□ -2.08
SYNE1Q8NF91 RPL9P21-201ENST00000392269 505 ntBASIC2.03□□□□□ -2.08
SYNE1Q8NF91 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AL445383.1-201ENST00000554689 874 ntBASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 5S_rRNA.23-201ENST00000612086 102 ntBASIC2.03□□□□□ -2.08
SYNE1Q8NF91 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 NBPF8-201ENST00000583271 5330 ntBASIC2.03□□□□□ -2.08
SYNE1Q8NF91 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms