Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ZMYND11-215ENST00000558098 1859 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
CDX1P47902 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CDX1P47902 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.62□□□□□ -1.51
CDX1P47902 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC5.62□□□□□ -1.51
CDX1P47902 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CDX1P47902 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.61□□□□□ -1.51
CDX1P47902 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CDX1P47902 MMP10-201ENST00000279441 1758 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CDX1P47902 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CDX1P47902 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC5.61□□□□□ -1.51
CDX1P47902 OR2T10-201ENST00000330500 1049 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
CDX1P47902 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
CDX1P47902 RNU6-891P-201ENST00000384280 111 ntBASIC5.61□□□□□ -1.51
CDX1P47902 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.61□□□□□ -1.51
CDX1P47902 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.61□□□□□ -1.51
CDX1P47902 NACAP7-201ENST00000407371 609 ntBASIC5.61□□□□□ -1.51
CDX1P47902 AC024937.2-201ENST00000411669 1242 ntBASIC5.61□□□□□ -1.51
CDX1P47902 AC007349.3-201ENST00000415356 872 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CDX1P47902 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CDX1P47902 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.61□□□□□ -1.51
CDX1P47902 RPL7AP14-201ENST00000424041 802 ntBASIC5.61□□□□□ -1.51
CDX1P47902 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC5.61□□□□□ -1.51
CDX1P47902 AL451136.1-201ENST00000435399 325 ntBASIC5.61□□□□□ -1.51
CDX1P47902 AL590399.4-201ENST00000436561 601 ntBASIC5.61□□□□□ -1.51
CDX1P47902 LINC00271-203ENST00000438618 1202 ntTSL 3 BASIC5.61□□□□□ -1.51
CDX1P47902 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
CDX1P47902 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC5.61□□□□□ -1.51
CDX1P47902 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.61□□□□□ -1.51
CDX1P47902 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC5.61□□□□□ -1.51
CDX1P47902 AC009963.4-201ENST00000448535 339 ntBASIC5.61□□□□□ -1.51
CDX1P47902 SRP68P2-201ENST00000456184 254 ntBASIC5.61□□□□□ -1.51
CDX1P47902 BX323845.2-201ENST00000458382 234 ntBASIC5.61□□□□□ -1.51
CDX1P47902 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC5.61□□□□□ -1.51
CDX1P47902 NACAP6-201ENST00000509572 622 ntBASIC5.61□□□□□ -1.51
CDX1P47902 AK6-204ENST00000512561 587 ntTSL 5 BASIC5.61□□□□□ -1.51
CDX1P47902 RNA5SP518-201ENST00000515957 119 ntBASIC5.61□□□□□ -1.51
CDX1P47902 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC5.61□□□□□ -1.51
CDX1P47902 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC5.61□□□□□ -1.51
CDX1P47902 CASP1P2-201ENST00000526830 1258 ntBASIC5.61□□□□□ -1.51
CDX1P47902 NQO1-205ENST00000561500 891 ntTSL 3 BASIC5.61□□□□□ -1.51
CDX1P47902 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CDX1P47902 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.61□□□□□ -1.51
CDX1P47902 FCGR1CP-201ENST00000579737 1127 ntBASIC5.61□□□□□ -1.51
CDX1P47902 AC027575.3-201ENST00000583058 2747 ntBASIC5.61□□□□□ -1.51
CDX1P47902 MIR4470-201ENST00000583453 72 ntBASIC5.61□□□□□ -1.51
CDX1P47902 AC006116.1-201ENST00000587908 2171 ntBASIC5.61□□□□□ -1.51
CDX1P47902 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC5.61□□□□□ -1.51
CDX1P47902 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CDX1P47902 Z93930.3-201ENST00000607919 749 ntBASIC5.61□□□□□ -1.51
CDX1P47902 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC5.61□□□□□ -1.51
CDX1P47902 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC5.61□□□□□ -1.51
CDX1P47902 AMYH02020865.1-207ENST00000617096 458 ntTSL 3 BASIC5.61□□□□□ -1.51
CDX1P47902 AL121985.3-201ENST00000620690 523 ntBASIC5.61□□□□□ -1.51
CDX1P47902 CR382285.2-201ENST00000624662 1495 ntBASIC5.61□□□□□ -1.51
CDX1P47902 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CDX1P47902 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CDX1P47902 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.61□□□□□ -1.51
CDX1P47902 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CDX1P47902 TBCCD1-203ENST00000424280 3058 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
CDX1P47902 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.61□□□□□ -1.51
CDX1P47902 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.6□□□□□ -1.51
CDX1P47902 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CDX1P47902 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
CDX1P47902 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.6□□□□□ -1.51
CDX1P47902 LINC00310-204ENST00000430922 2086 ntTSL 2 BASIC5.6□□□□□ -1.51
CDX1P47902 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC5.6□□□□□ -1.51
CDX1P47902 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CDX1P47902 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CDX1P47902 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CDX1P47902 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CDX1P47902 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.6□□□□□ -1.51
CDX1P47902 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.6□□□□□ -1.51
CDX1P47902 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC5.6□□□□□ -1.51
CDX1P47902 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CDX1P47902 IFT74-202ENST00000429045 1462 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CDX1P47902 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CDX1P47902 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CDX1P47902 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CDX1P47902 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CDX1P47902 RN7SKP174-201ENST00000363803 330 ntBASIC5.6□□□□□ -1.51
CDX1P47902 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CDX1P47902 RNA5SP35-201ENST00000391257 129 ntBASIC5.6□□□□□ -1.51
CDX1P47902 CNN3P1-201ENST00000401596 935 ntBASIC5.6□□□□□ -1.51
CDX1P47902 ZNF37CP-201ENST00000406795 241 ntBASIC5.6□□□□□ -1.51
CDX1P47902 MTERF4-205ENST00000407095 799 ntTSL 2 BASIC5.6□□□□□ -1.51
CDX1P47902 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CDX1P47902 DUTP4-201ENST00000424782 475 ntBASIC5.6□□□□□ -1.51
CDX1P47902 AC134879.1-201ENST00000426062 394 ntBASIC5.6□□□□□ -1.51
CDX1P47902 MTND1P10-201ENST00000426108 832 ntBASIC5.6□□□□□ -1.51
CDX1P47902 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.6□□□□□ -1.51
CDX1P47902 OR52S1P-201ENST00000427016 937 ntBASIC5.6□□□□□ -1.51
CDX1P47902 AC092646.1-201ENST00000427142 901 ntBASIC5.6□□□□□ -1.51
CDX1P47902 G6PC2-204ENST00000429379 645 ntTSL 2 BASIC5.6□□□□□ -1.51
CDX1P47902 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC5.6□□□□□ -1.51
CDX1P47902 DBIL5P2-201ENST00000443827 253 ntBASIC5.6□□□□□ -1.51
CDX1P47902 CYCSP44-201ENST00000448560 313 ntBASIC5.6□□□□□ -1.51
CDX1P47902 LINC01839-201ENST00000451348 727 ntTSL 3 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms