Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TAF1-201ENST00000276072 5692 ntAPPRIS P3 TSL 5 BASIC10.77□□□□□ -0.69
CUX1P39880 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
CUX1P39880 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CUX1P39880 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
CUX1P39880 RNFT1P3-201ENST00000340898 1052 ntBASIC10.77□□□□□ -0.69
CUX1P39880 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
CUX1P39880 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC10.77□□□□□ -0.69
CUX1P39880 AL353662.1-201ENST00000439099 327 ntBASIC10.77□□□□□ -0.69
CUX1P39880 AL161636.2-201ENST00000445179 927 ntBASIC10.77□□□□□ -0.69
CUX1P39880 AC023141.9-201ENST00000458734 412 ntBASIC10.77□□□□□ -0.69
CUX1P39880 RN7SL193P-201ENST00000491708 276 ntBASIC10.77□□□□□ -0.69
CUX1P39880 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC10.77□□□□□ -0.69
CUX1P39880 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC10.77□□□□□ -0.69
CUX1P39880 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC10.77□□□□□ -0.69
CUX1P39880 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC10.77□□□□□ -0.69
CUX1P39880 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC10.77□□□□□ -0.69
CUX1P39880 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC10.77□□□□□ -0.69
CUX1P39880 AC005332.4-201ENST00000592752 579 ntBASIC10.77□□□□□ -0.69
CUX1P39880 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC10.77□□□□□ -0.69
CUX1P39880 PLEKHA3P1-201ENST00000598554 894 ntBASIC10.77□□□□□ -0.69
CUX1P39880 AC010998.3-201ENST00000613871 631 ntBASIC10.77□□□□□ -0.69
CUX1P39880 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC10.77□□□□□ -0.69
CUX1P39880 5S_rRNA.28-201ENST00000638107 119 ntBASIC10.77□□□□□ -0.69
CUX1P39880 AC011447.6-201ENST00000623510 2598 ntBASIC10.77□□□□□ -0.69
CUX1P39880 PIGP-202ENST00000360525 6998 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CUX1P39880 TRPM3-213ENST00000396285 4701 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
CUX1P39880 TENM2-203ENST00000518659 8550 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
CUX1P39880 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.69
CUX1P39880 BPTF-203ENST00000335221 2627 ntTSL 5 BASIC10.77□□□□□ -0.69
CUX1P39880 PLA2G7-202ENST00000537365 1747 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
CUX1P39880 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
CUX1P39880 ADGRB3-202ENST00000370598 6010 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 MYO1E-201ENST00000288235 8673 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC10.76□□□□□ -0.69
CUX1P39880 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC10.76□□□□□ -0.69
CUX1P39880 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC10.76□□□□□ -0.69
CUX1P39880 AC098847.1-201ENST00000473094 348 ntBASIC10.76□□□□□ -0.69
CUX1P39880 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC10.76□□□□□ -0.69
CUX1P39880 AC083906.1-201ENST00000509298 406 ntBASIC10.76□□□□□ -0.69
CUX1P39880 RNA5SP362-201ENST00000516048 118 ntBASIC10.76□□□□□ -0.69
CUX1P39880 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC10.76□□□□□ -0.69
CUX1P39880 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC10.76□□□□□ -0.69
CUX1P39880 MIR6809-201ENST00000612189 116 ntBASIC10.76□□□□□ -0.69
CUX1P39880 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC10.76□□□□□ -0.69
CUX1P39880 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC10.76□□□□□ -0.69
CUX1P39880 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC10.76□□□□□ -0.69
CUX1P39880 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC10.76□□□□□ -0.69
CUX1P39880 OLFML1-201ENST00000329293 2792 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC10.76□□□□□ -0.69
CUX1P39880 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC10.76□□□□□ -0.69
CUX1P39880 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 AC245060.6-201ENST00000624350 8420 ntBASIC10.76□□□□□ -0.69
CUX1P39880 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 AC125238.2-201ENST00000430003 1440 ntBASIC10.76□□□□□ -0.69
CUX1P39880 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CUX1P39880 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
CUX1P39880 LRRC37A6P-202ENST00000448648 5444 ntBASIC10.76□□□□□ -0.69
CUX1P39880 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
CUX1P39880 AC122713.2-201ENST00000624942 3335 ntBASIC10.75□□□□□ -0.69
CUX1P39880 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
CUX1P39880 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
CUX1P39880 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC10.75□□□□□ -0.69
CUX1P39880 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CUX1P39880 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC10.75□□□□□ -0.69
CUX1P39880 SCARNA18.1-201ENST00000516330 83 ntBASIC10.75□□□□□ -0.69
CUX1P39880 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC10.75□□□□□ -0.69
CUX1P39880 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC10.75□□□□□ -0.69
CUX1P39880 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC10.75□□□□□ -0.69
CUX1P39880 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC10.75□□□□□ -0.69
CUX1P39880 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC10.75□□□□□ -0.69
CUX1P39880 RFPL4AP6-201ENST00000616792 846 ntBASIC10.75□□□□□ -0.69
CUX1P39880 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC10.75□□□□□ -0.69
CUX1P39880 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CUX1P39880 ZNF484-203ENST00000395505 3960 ntAPPRIS ALT2 TSL 2 BASIC10.75□□□□□ -0.69
CUX1P39880 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CUX1P39880 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CUX1P39880 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC10.75□□□□□ -0.69
CUX1P39880 ABHD2-201ENST00000352732 8735 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CUX1P39880 RNF19BPY-201ENST00000458209 1550 ntBASIC10.75□□□□□ -0.69
CUX1P39880 RNF41-212ENST00000615206 5216 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
CUX1P39880 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC10.75□□□□□ -0.69
CUX1P39880 ABLIM3-202ENST00000326685 4164 ntTSL 5 BASIC10.74□□□□□ -0.69
CUX1P39880 ZSCAN12P1-201ENST00000406489 419 ntBASIC10.74□□□□□ -0.69
CUX1P39880 NDUFS5P5-201ENST00000437256 321 ntBASIC10.74□□□□□ -0.69
CUX1P39880 PCBP2P1-201ENST00000437262 977 ntBASIC10.74□□□□□ -0.69
CUX1P39880 CFL1P4-201ENST00000451536 498 ntBASIC10.74□□□□□ -0.69
CUX1P39880 RN7SL714P-201ENST00000487050 298 ntBASIC10.74□□□□□ -0.69
CUX1P39880 AC117395.1-201ENST00000487390 403 ntBASIC10.74□□□□□ -0.69
CUX1P39880 AC051619.2-201ENST00000559063 397 ntBASIC10.74□□□□□ -0.69
CUX1P39880 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
CUX1P39880 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC10.74□□□□□ -0.69
CUX1P39880 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC10.74□□□□□ -0.69
CUX1P39880 AC127024.6-201ENST00000621598 424 ntBASIC10.74□□□□□ -0.69
CUX1P39880 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms