Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 APOBEC4-201ENST00000308641 2650 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HMGA1P17096 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HMGA1P17096 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HMGA1P17096 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HMGA1P17096 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
HMGA1P17096 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HMGA1P17096 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC6.8□□□□□ -1.32
HMGA1P17096 AL035422.1-201ENST00000414193 397 ntBASIC6.8□□□□□ -1.32
HMGA1P17096 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.8□□□□□ -1.32
HMGA1P17096 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.8□□□□□ -1.32
HMGA1P17096 OSTCP4-201ENST00000424397 449 ntBASIC6.8□□□□□ -1.32
HMGA1P17096 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HMGA1P17096 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC6.8□□□□□ -1.32
HMGA1P17096 GTF2IP14-201ENST00000441415 586 ntBASIC6.8□□□□□ -1.32
HMGA1P17096 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC6.8□□□□□ -1.32
HMGA1P17096 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC6.8□□□□□ -1.32
HMGA1P17096 VN2R1P-201ENST00000449668 1743 ntBASIC6.8□□□□□ -1.32
HMGA1P17096 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.8□□□□□ -1.32
HMGA1P17096 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.8□□□□□ -1.32
HMGA1P17096 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC6.8□□□□□ -1.32
HMGA1P17096 AC022415.1-202ENST00000486612 523 ntBASIC6.8□□□□□ -1.32
HMGA1P17096 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.8□□□□□ -1.32
HMGA1P17096 AC083906.1-201ENST00000509298 406 ntBASIC6.8□□□□□ -1.32
HMGA1P17096 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC6.8□□□□□ -1.32
HMGA1P17096 OR4A13P-201ENST00000529316 942 ntBASIC6.8□□□□□ -1.32
HMGA1P17096 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC6.8□□□□□ -1.32
HMGA1P17096 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC6.8□□□□□ -1.32
HMGA1P17096 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.8□□□□□ -1.32
HMGA1P17096 AC097641.3-201ENST00000613523 464 ntBASIC6.8□□□□□ -1.32
HMGA1P17096 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HMGA1P17096 AP001264.1-201ENST00000620602 703 ntBASIC6.8□□□□□ -1.32
HMGA1P17096 SAMMSON-214ENST00000641395 1264 ntBASIC6.8□□□□□ -1.32
HMGA1P17096 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.8□□□□□ -1.32
HMGA1P17096 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
HMGA1P17096 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC6.8□□□□□ -1.32
HMGA1P17096 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
HMGA1P17096 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HMGA1P17096 AL592430.1-202ENST00000414383 1546 ntTSL 3 BASIC6.8□□□□□ -1.32
HMGA1P17096 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HMGA1P17096 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.8□□□□□ -1.32
HMGA1P17096 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HMGA1P17096 AL353743.3-201ENST00000442109 1468 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
HMGA1P17096 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC6.79□□□□□ -1.32
HMGA1P17096 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC6.79□□□□□ -1.32
HMGA1P17096 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 RN7SKP237-201ENST00000364663 301 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
HMGA1P17096 AL157702.1-201ENST00000398764 426 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 RN7SKP281-201ENST00000410472 352 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.79□□□□□ -1.32
HMGA1P17096 MTND2P12-201ENST00000417560 1252 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 AC108479.1-201ENST00000431142 427 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC6.79□□□□□ -1.32
HMGA1P17096 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC6.79□□□□□ -1.32
HMGA1P17096 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
HMGA1P17096 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.79□□□□□ -1.32
HMGA1P17096 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.79□□□□□ -1.32
HMGA1P17096 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 HMGN1P17-201ENST00000513734 295 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 ZNF519P4-201ENST00000514008 125 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 AC006512.2-201ENST00000543250 486 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.79□□□□□ -1.32
HMGA1P17096 AL845552.1-201ENST00000556820 323 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC6.79□□□□□ -1.32
HMGA1P17096 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.79□□□□□ -1.32
HMGA1P17096 CNTNAP3P1-201ENST00000616657 906 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC6.79□□□□□ -1.32
HMGA1P17096 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.79□□□□□ -1.32
HMGA1P17096 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
HMGA1P17096 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC6.79□□□□□ -1.32
HMGA1P17096 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
HMGA1P17096 AL359694.2-201ENST00000567753 1615 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
HMGA1P17096 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HMGA1P17096 AL596244.1-201ENST00000567068 3779 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.79□□□□□ -1.32
HMGA1P17096 SPATA31B1P-201ENST00000434692 4016 ntBASIC6.79□□□□□ -1.32
HMGA1P17096 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
HMGA1P17096 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
HMGA1P17096 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HMGA1P17096 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
HMGA1P17096 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
HMGA1P17096 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HMGA1P17096 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
HMGA1P17096 CASC19-228ENST00000641414 1684 ntBASIC6.78□□□□□ -1.32
HMGA1P17096 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
HMGA1P17096 CLCA3P-203ENST00000490028 2781 ntBASIC6.78□□□□□ -1.32
HMGA1P17096 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms