Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 MIR744-201ENST00000578242 98 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC020914.7-201ENST00000594477 545 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AL359704.2-201ENST00000604335 521 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 AL161931.1-201ENST00000612768 246 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC061709.1-202ENST00000615029 527 ntTSL 3 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 PDE4DIP-241ENST00000616206 874 ntTSL 2 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 OR1N1-202ENST00000619659 939 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 OR5P3-202ENST00000641167 1193 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AL451064.2-201ENST00000623514 1654 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 ATP5BP1-201ENST00000411980 1574 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 NPM1P14-201ENST00000343743 866 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 RN7SKP188-201ENST00000410789 317 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC017035.1-201ENST00000411999 1115 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AL359633.1-201ENST00000421403 310 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 CYP4F34P-201ENST00000425951 481 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 DLG5-AS1-201ENST00000449852 487 ntTSL 2 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 MED28P7-201ENST00000456611 530 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 RN7SL382P-201ENST00000482631 282 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC105391.1-201ENST00000503155 1045 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 LINC01182-201ENST00000503532 582 ntTSL 4 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AP004607.5-201ENST00000532034 217 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC023161.1-201ENST00000549532 420 ntTSL 3 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC012640.3-201ENST00000607847 430 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC012510.1-201ENST00000607946 759 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 Six3os1_1.1-201ENST00000620900 87 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC002044.3-201ENST00000623314 541 ntBASIC5.85□□□□□ -1.47
NKX3-1Q99801 TEX41-279ENST00000629149 609 ntTSL 5 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AL049541.1-201ENST00000630976 642 ntTSL 2 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
NKX3-1Q99801 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AL512329.1-201ENST00000404600 1592 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 DLEU2L-201ENST00000371086 3555 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 OR51M1-201ENST00000328611 1058 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 HYPM-201ENST00000341016 501 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 RN7SKP55-201ENST00000364888 307 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 NPM1P31-201ENST00000399021 764 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 RPS20P25-201ENST00000412447 352 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 AL139135.1-201ENST00000412675 209 ntBASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms