Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNA5SP382-201ENST00000363355 112 ntBASIC6.31□□□□□ -1.4
SOX3P41225 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC6.31□□□□□ -1.4
SOX3P41225 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC6.31□□□□□ -1.4
SOX3P41225 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC6.31□□□□□ -1.4
SOX3P41225 AHCYP8-201ENST00000425108 209 ntBASIC6.31□□□□□ -1.4
SOX3P41225 AP003385.1-201ENST00000426387 893 ntBASIC6.31□□□□□ -1.4
SOX3P41225 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC6.31□□□□□ -1.4
SOX3P41225 PA2G4P1-201ENST00000442248 1197 ntBASIC6.31□□□□□ -1.4
SOX3P41225 RPL31P11-202ENST00000454082 372 ntBASIC6.31□□□□□ -1.4
SOX3P41225 AC068647.2-202ENST00000485020 390 ntTSL 3 BASIC6.31□□□□□ -1.4
SOX3P41225 CREM-242ENST00000490511 469 ntTSL 2 BASIC6.31□□□□□ -1.4
SOX3P41225 RN7SL143P-201ENST00000496780 297 ntBASIC6.31□□□□□ -1.4
SOX3P41225 IGLVVII-41-1-201ENST00000518405 151 ntBASIC6.31□□□□□ -1.4
SOX3P41225 AC087752.2-201ENST00000521219 281 ntBASIC6.31□□□□□ -1.4
SOX3P41225 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.31□□□□□ -1.4
SOX3P41225 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC6.31□□□□□ -1.4
SOX3P41225 CHEK2P2-201ENST00000554701 672 ntBASIC6.31□□□□□ -1.4
SOX3P41225 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC6.31□□□□□ -1.4
SOX3P41225 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
SOX3P41225 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC6.31□□□□□ -1.4
SOX3P41225 GTF2IP6-201ENST00000583143 541 ntBASIC6.31□□□□□ -1.4
SOX3P41225 AP001542.1-201ENST00000591314 200 ntBASIC6.31□□□□□ -1.4
SOX3P41225 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.31□□□□□ -1.4
SOX3P41225 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC6.31□□□□□ -1.4
SOX3P41225 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SOX3P41225 MIR6849-201ENST00000618543 69 ntBASIC6.31□□□□□ -1.4
SOX3P41225 AC131009.3-201ENST00000621809 287 ntBASIC6.31□□□□□ -1.4
SOX3P41225 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SOX3P41225 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.31□□□□□ -1.4
SOX3P41225 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SOX3P41225 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
SOX3P41225 AC022034.1-201ENST00000512867 2156 ntBASIC6.31□□□□□ -1.4
SOX3P41225 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SOX3P41225 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SOX3P41225 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SOX3P41225 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
SOX3P41225 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SOX3P41225 AC092701.1-201ENST00000623627 1551 ntBASIC6.31□□□□□ -1.4
SOX3P41225 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
SOX3P41225 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SOX3P41225 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SOX3P41225 EPS15P1-202ENST00000459691 2071 ntBASIC6.3□□□□□ -1.4
SOX3P41225 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.3□□□□□ -1.4
SOX3P41225 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
SOX3P41225 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 ZNF658B-201ENST00000602828 3408 ntBASIC6.3□□□□□ -1.4
SOX3P41225 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 C5orf63-201ENST00000296662 966 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
SOX3P41225 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
SOX3P41225 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC6.3□□□□□ -1.4
SOX3P41225 MIR541-201ENST00000401360 84 ntBASIC6.3□□□□□ -1.4
SOX3P41225 AL353133.1-201ENST00000407695 401 ntBASIC6.3□□□□□ -1.4
SOX3P41225 MIR1266-201ENST00000408125 84 ntBASIC6.3□□□□□ -1.4
SOX3P41225 RPSAP60-201ENST00000415403 880 ntBASIC6.3□□□□□ -1.4
SOX3P41225 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 AL355994.1-201ENST00000424379 260 ntBASIC6.3□□□□□ -1.4
SOX3P41225 AL590128.1-201ENST00000433407 286 ntBASIC6.3□□□□□ -1.4
SOX3P41225 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX3P41225 E2F6P3-201ENST00000441743 743 ntBASIC6.3□□□□□ -1.4
SOX3P41225 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC6.3□□□□□ -1.4
SOX3P41225 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX3P41225 SUMO2P10-201ENST00000452006 288 ntBASIC6.3□□□□□ -1.4
SOX3P41225 AC073476.1-201ENST00000452854 407 ntBASIC6.3□□□□□ -1.4
SOX3P41225 AC022080.2-201ENST00000452932 533 ntBASIC6.3□□□□□ -1.4
SOX3P41225 NPM1P9-201ENST00000453156 844 ntBASIC6.3□□□□□ -1.4
SOX3P41225 MEF2AP1-201ENST00000454867 863 ntBASIC6.3□□□□□ -1.4
SOX3P41225 RN7SL70P-201ENST00000478322 302 ntBASIC6.3□□□□□ -1.4
SOX3P41225 RPL5P33-201ENST00000487833 905 ntBASIC6.3□□□□□ -1.4
SOX3P41225 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 NREP-217ENST00000509025 987 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX3P41225 AC139713.1-202ENST00000512366 460 ntBASIC6.3□□□□□ -1.4
SOX3P41225 NREP-223ENST00000515855 801 ntTSL 4 BASIC6.3□□□□□ -1.4
SOX3P41225 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC6.3□□□□□ -1.4
SOX3P41225 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 AP004607.6-201ENST00000525033 1202 ntBASIC6.3□□□□□ -1.4
SOX3P41225 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX3P41225 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX3P41225 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC6.3□□□□□ -1.4
SOX3P41225 AC067852.5-201ENST00000589299 310 ntBASIC6.3□□□□□ -1.4
SOX3P41225 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC6.3□□□□□ -1.4
SOX3P41225 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 SAMMSON-214ENST00000641395 1264 ntBASIC6.3□□□□□ -1.4
SOX3P41225 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
SOX3P41225 KCNMB2-201ENST00000358316 2271 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX3P41225 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 152.5 ms